BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0111100 Os09g0111100|AK103499
(364 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G67260.1 | chr5:26836313-26837665 FORWARD LENGTH=368 122 3e-28
AT3G50070.1 | chr3:18565322-18566669 REVERSE LENGTH=362 122 4e-28
AT4G34160.1 | chr4:16357903-16359304 FORWARD LENGTH=377 121 7e-28
AT2G22490.2 | chr2:9554157-9555873 REVERSE LENGTH=363 81 8e-16
AT1G70210.1 | chr1:26440015-26441980 FORWARD LENGTH=340 80 2e-15
AT5G10440.1 | chr5:3280611-3282342 REVERSE LENGTH=299 77 1e-14
AT5G65420.3 | chr5:26141592-26143750 REVERSE LENGTH=319 73 2e-13
AT4G37630.1 | chr4:17679497-17680788 FORWARD LENGTH=324 61 9e-10
>AT5G67260.1 | chr5:26836313-26837665 FORWARD LENGTH=368
Length = 367
Score = 122 bits (306), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 70/179 (39%), Positives = 99/179 (55%), Gaps = 16/179 (8%)
Query: 58 GKEDPLRPAADDDGYGG--VSAREAAVGWALRAVARLGFSALTAALAVAYLDRCFLGGAL 115
KE+ P + G VS R+ A+ W LR + GF++LTA LAV Y DR F+
Sbjct: 74 SKENETNPCFGEQILDGFLVSCRKEALDWVLRVKSHYGFTSLTAILAVNYFDR-FMTSIK 132
Query: 116 RLGDRPWMXXXXXXXXXXXXXKVEETRVPVLLDLQLCAAERADPNEAYVFEDKTVRRMEL 175
D+PWM KVEE +VP+LLDLQ+ A Y+FE KT++RMEL
Sbjct: 133 LQTDKPWMSQLVAVASLSLAAKVEEIQVPLLLDLQVEEAR-------YLFEAKTIQRMEL 185
Query: 176 LVLSALGWRMHPVTPLSYLQPLL---GTAHAARL---HHCDTALLALMPDWRWPRHRPS 228
L+LS L WRMHPVTP+S+ ++ G+ +L C+ L++++ D R+ R+ PS
Sbjct: 186 LILSTLQWRMHPVTPISFFDHIIRRFGSKWHQQLDFCRKCERLLISVIADTRFMRYFPS 244
>AT3G50070.1 | chr3:18565322-18566669 REVERSE LENGTH=362
Length = 361
Score = 122 bits (305), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 70/178 (39%), Positives = 95/178 (53%), Gaps = 16/178 (8%)
Query: 58 GKEDPLRPAADDDGYGGVSAREAAVGWALRAVARLGFSALTAALAVAYLDRCFLGGALRL 117
K++P D V RE A+ W + + GF++LTA LAV Y DR F+
Sbjct: 66 SKQEPCLYDEILDDEFLVLCREKALDWIFKVKSHYGFNSLTALLAVNYFDR-FITSRKFQ 124
Query: 118 GDRPWMXXXXXXXXXXXXXKVEETRVPVLLDLQLCAAERADPNEAYVFEDKTVRRMELLV 177
D+PWM KVEE RVP LLD Q+ A YVFE KT++RMELLV
Sbjct: 125 TDKPWMSQLTALACLSLAAKVEEIRVPFLLDFQVEEAR-------YVFEAKTIQRMELLV 177
Query: 178 LSALGWRMHPVTPLSYLQPLLGTAHAARLHH-------CDTALLALMPDWRWPRHRPS 228
LS L WRMHPVTP+S+ ++ ++ + HH C++ LL+++PD R+ PS
Sbjct: 178 LSTLDWRMHPVTPISFFDHIIRR-YSFKSHHQLEFLSRCESLLLSIIPDSRFLSFSPS 234
>AT4G34160.1 | chr4:16357903-16359304 FORWARD LENGTH=377
Length = 376
Score = 121 bits (303), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 69/177 (38%), Positives = 97/177 (54%), Gaps = 15/177 (8%)
Query: 58 GKEDPLRPAADDDGYGGVSAREAAVGWALRAVARLGFSALTAALAVAYLDRCFLGGALRL 117
KE+ + DD Y + R+ AVGW LR A GFS L A LA+ YLD+ +L+
Sbjct: 68 SKEEEQGLSCLDDVYLS-TDRKEAVGWILRVNAHYGFSTLAAVLAITYLDKFICSYSLQ- 125
Query: 118 GDRPWMXXXXXXXXXXXXXKVEETRVPVLLDLQLCAAERADPNEAYVFEDKTVRRMELLV 177
D+PWM KVEET+VP+LLD Q+ YVFE KT++RMELL+
Sbjct: 126 RDKPWMLQLVSVACLSLAAKVEETQVPLLLDFQV-------EETKYVFEAKTIQRMELLI 178
Query: 178 LSALGWRMHPVTPLSYLQPLL------GTAHAARLHHCDTALLALMPDWRWPRHRPS 228
LS L W+MH +TP+S++ ++ AH L+ C LL+++ D R+ + PS
Sbjct: 179 LSTLEWKMHLITPISFVDHIIRRLGLKNNAHWDFLNKCHRLLLSVISDSRFVGYLPS 235
>AT2G22490.2 | chr2:9554157-9555873 REVERSE LENGTH=363
Length = 362
Score = 81.3 bits (199), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 64/120 (53%), Gaps = 8/120 (6%)
Query: 75 VSAREAAVGWALRAVARLGFSALTAALAVAYLDRCFLGGALRLGDRPWMXXXXXXXXXXX 134
+S R A+ W L+ A F L L++ YLDR FL D+ W
Sbjct: 94 LSVRNQALDWILKVCAHYHFGHLCICLSMNYLDR-FLTSYELPKDKDWAAQLLAVSCLSL 152
Query: 135 XXKVEETRVPVLLDLQLCAAERADPNEAYVFEDKTVRRMELLVLSALGWRMHPVTPLSYL 194
K+EET VP ++DLQ+ DP +VFE KT++RMELLV++ L WR+ +TP S++
Sbjct: 153 ASKMEETDVPHIVDLQV-----EDPK--FVFEAKTIKRMELLVVTTLNWRLQALTPFSFI 205
>AT1G70210.1 | chr1:26440015-26441980 FORWARD LENGTH=340
Length = 339
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 77/160 (48%), Gaps = 16/160 (10%)
Query: 76 SAREAAVGWALRAVARLGFSALTAALAVAYLDRCFLGGALRLGDRP-WMXXXXXXXXXXX 134
SARE +V W L+ A F LTA LAV Y+DR FL A RL + W
Sbjct: 80 SAREDSVAWILKVQAYYNFQPLTAYLAVNYMDR-FLY-ARRLPETSGWPMQLLAVACLSL 137
Query: 135 XXKVEETRVPVLLDLQLCAAERADPNEAYVFEDKTVRRMELLVLSALGWRMHPVTPLSYL 194
K+EE VP L D Q+ + Y+FE KT++RMELLVLS L WR+ VTP ++
Sbjct: 138 AAKMEEILVPSLFDFQVAGVK-------YLFEAKTIKRMELLVLSVLDWRLRSVTPFDFI 190
Query: 195 QPLL------GTAHAARLHHCDTALLALMPDWRWPRHRPS 228
GT + H +L+ + + + + PS
Sbjct: 191 SFFAYKIDPSGTFLGFFISHATEIILSNIKEASFLEYWPS 230
>AT5G10440.1 | chr5:3280611-3282342 REVERSE LENGTH=299
Length = 298
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 66/133 (49%), Gaps = 8/133 (6%)
Query: 70 DGYGGVSAREAAVGWALRAVARLGFSALTAALAVAYLDRCFLGGALRLGDRPWMXXXXXX 129
+G + R A+GW +A L F L LA+ YLDR FL + W
Sbjct: 61 NGDLDFNVRIQALGWIWKACEELQFGPLCICLAMNYLDR-FLSVHDLPSGKAWTVQLLAV 119
Query: 130 XXXXXXXKVEETRVPVLLDLQLCAAERADPNEAYVFEDKTVRRMELLVLSALGWRMHPVT 189
K+EET VP L+ LQ+ A +VFE K+V+RMELLVL+ L WR+ VT
Sbjct: 120 ACLSLAAKIEETNVPELMQLQVGAP-------MFVFEAKSVQRMELLVLNVLRWRLRAVT 172
Query: 190 PLSYLQPLLGTAH 202
P SY++ L +
Sbjct: 173 PCSYVRYFLSKIN 185
>AT5G65420.3 | chr5:26141592-26143750 REVERSE LENGTH=319
Length = 318
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 67/135 (49%), Gaps = 21/135 (15%)
Query: 84 WALRAVARLG--------FSALTAALAVAYLDRCFLGGALRLGDRPWMXXXXXXXXXXXX 135
W +R + R F L LA+ YLDR FL + W+
Sbjct: 86 WKIRGLCRTDREACEVHQFGPLCFCLAMNYLDR-FLSVHDLPSGKGWILQLLAVACLSLA 144
Query: 136 XKVEETRVPVLLDLQLCAAERADPNEAYVFEDKTVRRMELLVLSALGWRMHPVTPLSYLQ 195
K+EET VP+L+DLQ+ DP +VFE K+V+RMELLVL+ L WR+ +TP SY++
Sbjct: 145 AKIEETEVPMLIDLQV-----GDPQ--FVFEAKSVQRMELLVLNKLKWRLRAITPCSYIR 197
Query: 196 PLLGTAHAARLHHCD 210
L ++ CD
Sbjct: 198 YFL-----RKMSKCD 207
>AT4G37630.1 | chr4:17679497-17680788 FORWARD LENGTH=324
Length = 323
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 64/146 (43%), Gaps = 17/146 (11%)
Query: 76 SAREAAVGWALRAVARLGFSALTAALAVAYLD----RCFLGGALRLGDRPWMXXXXXXXX 131
S R A+ W L R GF TA +A++Y D + F+G D W
Sbjct: 70 SDRLIAIDWILTTRTRFGFQHQTAYIAISYFDLFLHKRFIGLQ---KDETWAMRLLSVAC 126
Query: 132 XXXXXKVEETRVPVLLDLQLCAAERADPNEAYVFEDKTVRRMELLVLSALGWRMHPVTPL 191
K+EE VP L + + +VF+ +R+ ELL+LS L W+M+ +TP
Sbjct: 127 LSLAAKMEERIVPGL--------SQYPQDHDFVFKPDVIRKTELLILSTLDWKMNLITPF 178
Query: 192 SYLQPLLGTAHAARLHHCDTALLALM 217
Y L A ++ +H + L L+
Sbjct: 179 HYFNYFL--AKISQDNHSVSKDLVLL 202
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.137 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,783,229
Number of extensions: 131014
Number of successful extensions: 229
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 215
Number of HSP's successfully gapped: 8
Length of query: 364
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 264
Effective length of database: 8,364,969
Effective search space: 2208351816
Effective search space used: 2208351816
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)