Os08g0421100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like domain containing protein.
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Os08g0421100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 185.87 | 0.641 | 6.59 | -1.52 | 1.86 | 1.14 | -3.01 | -4.74 | -0.595 | 21.8 | 20.36 | 1383 | -- | -- |
| 202.24 | 0.667 | 6.42 | -0.0555 | 2.14 | 1.29 | -2.92 | -- | -0.217 | 22.7 | 20.36 | 1383 | -- | -- |
| 207.79 | 0.671 | 6.58 | -1.6 | 1.64 | 1.38 | -- | -6.54 | -0.639 | 21.9 | 18.95 | 893 | -- | -- |
| 237.28 | 0.722 | 6.42 | 0.038 | 2.17 | 1.41 | -- | -- | -0.228 | 22.8 | 20.36 | 1383 | -- | -- |
| 334.25 | 0.852 | 6.61 | -1.98 | -- | 2.5 | -- | -7.62 | -0.868 | -- | 20.32 | 789 | -- | -- |
| 229.55 | 0.71 | 6.37 | 0.209 | 1.9 | -- | -3.12 | -- | 0.0039 | 22 | -- | -- | -- | -- |
| 267.48 | 0.766 | 6.37 | 0.331 | 1.92 | -- | -- | -- | 0.0112 | 21.9 | -- | -- | -- | -- |
| 375.28 | 0.902 | 6.41 | -0.318 | -- | 2.46 | -- | -- | -0.396 | -- | 16.36 | 773 | -- | -- |
| 237.32 | 0.721 | 6.42 | -- | 2.18 | 1.42 | -- | -- | -0.234 | 22.8 | 20.36 | 1383 | -- | -- |
| 487.66 | 1.03 | 6.31 | 0.353 | -- | -- | -- | -- | 0.0113 | -- | -- | -- | -- | -- |
| 270.38 | 0.769 | 6.38 | -- | 1.92 | -- | -- | -- | -0.0257 | 21.9 | -- | -- | -- | -- |
| 377.69 | 0.905 | 6.4 | -- | -- | 2.33 | -- | -- | -0.347 | -- | 16.5 | 765 | -- | -- |
| 490.94 | 1.03 | 6.32 | -- | -- | -- | -- | -- | -0.0279 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 169.01 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 2 | 14 |
| 2 | 169.04 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 2 | 14 |
| 3 | 169.04 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 2 | 14 |
| 7 | 169.37 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 11 | 169.65 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 25 | 170.80 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 3 | 13 |
| 28 | 170.83 | temperature | 25.0 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 29 | 170.84 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 33 | 171.02 | temperature | 25.0 | 43200 | > th | dose dependent | rect. | 13 | 4 |
| 36 | 171.03 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 1 | 10 |
| 44 | 171.09 | temperature | 25.0 | 43200 | > th | dose dependent | rect. | 3 | 14 |
| 47 | 171.11 | temperature | 25.0 | 43200 | > th | dose dependent | rect. | 9 | 9 |
| 92 | 171.20 | temperature | 25.0 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 99 | 171.21 | temperature | 25.0 | 43200 | > th | dose dependent | sin | 0 | NA |
| 131 | 171.27 | temperature | 30.0 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 137 | 171.28 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 9 | 6 |
| 150 | 171.31 | temperature | 25.0 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 171 | 171.34 | temperature | 25.0 | 43200 | > th | dose dependent | rect. | 10 | 20 |
| 214 | 171.41 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 2 | 4 |
| 215 | 171.41 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 2 | 4 |
| 221 | 171.42 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 246 | 171.46 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 23 | 12 |
| 248 | 171.46 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 23 | 12 |
| 277 | 171.50 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 23 | 12 |
| 287 | 171.51 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 21 | 13 |
| 301 | 171.54 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 2 | 4 |
| 323 | 171.57 | precipitation | 0.1 | 43200 | < th | dose independent | sin | 4 | NA |
| 324 | 171.57 | temperature | 25.0 | 43200 | > th | dose dependent | no | NA | NA |
| 325 | 171.57 | precipitation | 0.1 | 43200 | < th | dose dependent | sin | 4 | NA |
| 334 | 171.59 | precipitation | 0.1 | 43200 | > th | dose independent | sin | 4 | NA |
| 335 | 171.59 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 23 | 13 |
| 354 | 171.63 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 3 | 8 |
| 358 | 171.64 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 1 | 11 |
| 369 | 171.70 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 4 | 7 |
| 384 | 171.77 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 4 | 1 |
| 416 | 171.86 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 24 | 12 |
| 432 | 171.90 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 2 | 4 |
| 445 | 171.95 | temperature | 25.0 | 43200 | > th | dose independent | sin | 6 | NA |
| 453 | 171.98 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 463 | 172.01 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 7 | 9 |
| 485 | 172.08 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 7 | 9 |
| 487 | 172.08 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 7 | 9 |
| 492 | 172.12 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 497 | 172.12 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 517 | 172.24 | temperature | 25.0 | 43200 | < th | dose independent | sin | 6 | NA |
| 580 | 172.57 | temperature | 20.0 | 720 | > th | dose dependent | sin | 9 | NA |
| 605 | 172.66 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 1 | 6 |
| 622 | 172.76 | precipitation | 0.1 | 43200 | > th | dose dependent | sin | 5 | NA |
| 624 | 172.77 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 630 | 172.82 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 645 | 172.87 | temperature | 20.0 | 270 | > th | dose dependent | sin | 6 | NA |
| 652 | 172.93 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 14 | 13 |
| 653 | 172.93 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 14 | 18 |
| 687 | 173.04 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 7 | 8 |
| 693 | 173.07 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 9 | 2 |
| 908 | 173.75 | temperature | 30.0 | 43200 | < th | dose independent | sin | 16 | NA |
| 911 | 173.77 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 18 | 17 |
| 941 | 173.83 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 8 | 7 |
| 986 | 173.97 | temperature | 30.0 | 43200 | > th | dose independent | sin | 15 | NA |
| 988 | 173.97 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 23 | 8 |
| 990 | 173.97 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 23 | 8 |
| 991 | 173.98 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 23 | 8 |