BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0421100 Os08g0421100|Os08g0421100
(291 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0421100 Cyclin-like domain containing protein 394 e-110
Os06g0236600 Similar to Cyclin delta-1 105 3e-23
Os09g0382300 Similar to Cyclin D3.1 protein 97 1e-20
Os08g0479300 Cyclin-like domain containing protein 97 2e-20
Os09g0466100 Cyclin-like domain containing protein 97 2e-20
Os07g0620800 Cyclin-like domain containing protein 88 8e-18
>Os08g0421100 Cyclin-like domain containing protein
Length = 291
Score = 394 bits (1012), Expect = e-110, Method: Compositional matrix adjust.
Identities = 197/239 (82%), Positives = 197/239 (82%)
Query: 19 VVFEYLLCTEEDAASAGSFFQQLQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 78
VVFEYLLCTEEDAASAGSFFQQLQG
Sbjct: 19 VVFEYLLCTEEDAASAGSFFQQLQGPAPAVSSSPSTTTATAPAAAGSCDDGGEEEEEEVW 78
Query: 79 XXXXXXXLIGGEAERSHSPRADYPGRLRSGRPADLAARADSVAWILKVRELYGMLPVTAY 138
LIGGEAERSHSPRADYPGRLRSGRPADLAARADSVAWILKVRELYGMLPVTAY
Sbjct: 79 TVDVVAELIGGEAERSHSPRADYPGRLRSGRPADLAARADSVAWILKVRELYGMLPVTAY 138
Query: 139 LAVSYMDRFLSLHRLPMEDARYIFEHRTIFRMELLVLDALDWRLRSITPFTFMYLFADKV 198
LAVSYMDRFLSLHRLPMEDARYIFEHRTIFRMELLVLDALDWRLRSITPFTFMYLFADKV
Sbjct: 139 LAVSYMDRFLSLHRLPMEDARYIFEHRTIFRMELLVLDALDWRLRSITPFTFMYLFADKV 198
Query: 199 DPNGKHIRELIHQATQTLSSWITAHHPSQQQQCYAPPEAIIRCYRLMQQLISSNNVGRE 257
DPNGKHIRELIHQATQTLSSWITAHHPSQQQQCYAPPEAIIRCYRLMQQLISSNNVGRE
Sbjct: 199 DPNGKHIRELIHQATQTLSSWITAHHPSQQQQCYAPPEAIIRCYRLMQQLISSNNVGRE 257
>Os06g0236600 Similar to Cyclin delta-1
Length = 347
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/136 (44%), Positives = 76/136 (55%), Gaps = 32/136 (23%)
Query: 117 ADSVAWILKVRELYGMLPVTAYLAVSYMDRFLSLHRLP---------------------- 154
++SV+WILKVR ++G P TAYLAVSYMDRF+S LP
Sbjct: 126 SESVSWILKVRSVHGFQPATAYLAVSYMDRFMSSRSLPDHGWASQLLCVACLSLAAKMEE 185
Query: 155 ----------MEDARYIFEHRTIFRMELLVLDALDWRLRSITPFTFMYLFADKVDPNGKH 204
+E R+IFE RTI RMEL+VL LDWRLRS+TPF F+ FA KV +G+
Sbjct: 186 SSAPPLLDLQIEGTRFIFEPRTIQRMELIVLVELDWRLRSVTPFAFVDFFACKVGSSGRS 245
Query: 205 IRELIHQATQTLSSWI 220
R L +A Q + S I
Sbjct: 246 SRILALRACQIILSAI 261
>Os09g0382300 Similar to Cyclin D3.1 protein
Length = 271
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/195 (38%), Positives = 99/195 (50%), Gaps = 45/195 (23%)
Query: 86 LIGGEAERSHSPRADYPGRLRSGRPADLAARADSVAWILKVRELYGMLPVTAYLAVSYMD 145
LIGGEAE +SPR+DYP RLRS R D AARA+SV+WILKV+E G LP+TAYLAV+YMD
Sbjct: 55 LIGGEAE--YSPRSDYPDRLRS-RSIDPAARAESVSWILKVQEYNGFLPLTAYLAVNYMD 111
Query: 146 RFLSLHRLPMEDARYIFEHRTIFRMELLVLDALDWRLR---SITPFTFMYLFADKVDPNG 202
RFLSL LP + M+LL + L + ++ P + + L A +V
Sbjct: 112 RFLSLRHLP---------EGQGWAMQLLAVACLSLAAKMEETLVP-SLLDLQASRV---L 158
Query: 203 KHIRELIHQATQTLSSWITAHHPSQQQQ-------------CYAPP------------EA 237
KHI + Q + ++ H PS + P E
Sbjct: 159 KHISNAMVQNANSDIQFLD-HCPSSMAAAAVLCATGETPSLAFVNPELAVNWCIGLAEEG 217
Query: 238 IIRCYRLMQQLISSN 252
I CY+LMQQL+ N
Sbjct: 218 ISSCYQLMQQLVIGN 232
>Os08g0479300 Cyclin-like domain containing protein
Length = 383
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 86/161 (53%), Gaps = 34/161 (21%)
Query: 90 EAERSHSPRADYPGRLRSGR-PADLAARADSVAWILKVRELYGMLPVTAYLAVSYMDRFL 148
E E++H PRADY RLR G DL R++++ WI +V Y VTAYLAV+Y+DRFL
Sbjct: 83 EREQAHMPRADYGERLRGGGGDVDLRVRSEAIGWIWEVYTYYNFSSVTAYLAVNYLDRFL 142
Query: 149 SLHRLP--------------------MEDA-------------RYIFEHRTIFRMELLVL 175
S + LP ME+ R++FE TI RMELLVL
Sbjct: 143 SQYELPEGRDWMTQLLSVACLSIAAKMEETVVPQCLDLQIGEPRFLFEVETIHRMELLVL 202
Query: 176 DALDWRLRSITPFTFMYLFADKVDPNGKHIRELIHQATQTL 216
L+WR++++TPF+++ F K++ R + ++++ +
Sbjct: 203 TNLNWRMQAVTPFSYIDYFLRKLNSGNAAPRSWLLRSSELI 243
>Os09g0466100 Cyclin-like domain containing protein
Length = 356
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 82/154 (53%), Gaps = 40/154 (25%)
Query: 90 EAERSHSPRADYPGRLRSGR---PADLAARADSVAWILKVRELYGMLPVTAYLAVSYMDR 146
E E H PR DY RLR+G DL R D++ WI KV Y P+TA LAV+Y+DR
Sbjct: 74 ETEADHMPREDYAERLRAGGGDGDLDLRVRMDAIDWIWKVHSYYSFAPLTACLAVNYLDR 133
Query: 147 FLSLHRLP--------------------MEDA-------------RYIFEHRTIFRMELL 173
FLSL++LP ME+ RY+FE +TI RMELL
Sbjct: 134 FLSLYQLPDGKDWMTQLLAVACLSLAAKMEETDVPQSLDLQVGEERYVFEAKTIQRMELL 193
Query: 174 VLDALDWRLRSITPFTFMYLFADKVD----PNGK 203
VL L WR++++TPF+++ F +++ P+G+
Sbjct: 194 VLSTLKWRMQAVTPFSYVDYFLRELNGGDPPSGR 227
>Os07g0620800 Cyclin-like domain containing protein
Length = 356
Score = 87.8 bits (216), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 80/165 (48%), Gaps = 42/165 (25%)
Query: 90 EAERSHSPRADYPGRLRSGRPADLAARADSVAWILKVRELYGMLPVTAYLAVSYMDRFLS 149
E E H P+ Y +L G + + R D++ WI KV Y P++ YLAV+Y+DRFLS
Sbjct: 70 EKEMDHQPQRGYLEKLELGG-LECSWRKDAIDWICKVHSYYNFGPLSLYLAVNYLDRFLS 128
Query: 150 LHRLP--------------------ME-------------DARYIFEHRTIFRMELLVLD 176
LP ME DA Y+FE R I RMEL+V+
Sbjct: 129 SFNLPHDESWMQQLLSVSCLSLATKMEETVVPLPMDLQVFDAEYVFEARHIKRMELIVMK 188
Query: 177 ALDWRLRSITPFTFMYLFADKVDPNGKHIRELIHQATQTLSSWIT 221
L WRL+++TPF+F+ F DK + GK + TL+SW +
Sbjct: 189 TLKWRLQAVTPFSFIGYFLDKFN-EGK-------PPSYTLASWCS 225
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.325 0.137 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,303,181
Number of extensions: 251545
Number of successful extensions: 715
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 710
Number of HSP's successfully gapped: 6
Length of query: 291
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 191
Effective length of database: 11,814,401
Effective search space: 2256550591
Effective search space used: 2256550591
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 155 (64.3 bits)