BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0421100 Os08g0421100|Os08g0421100
(291 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G70210.1 | chr1:26440015-26441980 FORWARD LENGTH=340 129 2e-30
AT5G10440.1 | chr5:3280611-3282342 REVERSE LENGTH=299 86 2e-17
AT2G22490.2 | chr2:9554157-9555873 REVERSE LENGTH=363 82 3e-16
AT5G65420.3 | chr5:26141592-26143750 REVERSE LENGTH=319 82 3e-16
AT5G67260.1 | chr5:26836313-26837665 FORWARD LENGTH=368 69 3e-12
AT3G50070.1 | chr3:18565322-18566669 REVERSE LENGTH=362 69 3e-12
AT1G34460.1 | chr1:12595110-12599628 FORWARD LENGTH=492 49 3e-06
>AT1G70210.1 | chr1:26440015-26441980 FORWARD LENGTH=340
Length = 339
Score = 129 bits (324), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 85/229 (37%), Positives = 107/229 (46%), Gaps = 66/229 (28%)
Query: 90 EAERSHSPRADYPGRLRSGRPADLAARADSVAWILKVRELYGMLPVTAYLAVSYMDRFLS 149
E ER P DY R ++ R D +AR DSVAWILKV+ Y P+TAYLAV+YMDRFL
Sbjct: 57 EDERHFVPGHDYLSRFQT-RSLDASAREDSVAWILKVQAYYNFQPLTAYLAVNYMDRFLY 115
Query: 150 LHRLP--------------------MED-------------ARYIFEHRTIFRMELLVLD 176
RLP ME+ +Y+FE +TI RMELLVL
Sbjct: 116 ARRLPETSGWPMQLLAVACLSLAAKMEEILVPSLFDFQVAGVKYLFEAKTIKRMELLVLS 175
Query: 177 ALDWRLRSITPFTFMYLFADKVDPNGKHIRELIHQATQ---------------------- 214
LDWRLRS+TPF F+ FA K+DP+G + I AT+
Sbjct: 176 VLDWRLRSVTPFDFISFFAYKIDPSGTFLGFFISHATEIILSNIKEASFLEYWPSSIAAA 235
Query: 215 ----------TLSSWITAHHPSQQQQCYAPPEAIIRCYRLMQQLISSNN 253
+LSS + H + E I+RCYRLM+ + NN
Sbjct: 236 AILCVANELPSLSSVVNPHESPETWCDGLSKEKIVRCYRLMKAMAIENN 284
>AT5G10440.1 | chr5:3280611-3282342 REVERSE LENGTH=299
Length = 298
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 82/164 (50%), Gaps = 37/164 (22%)
Query: 90 EAERSHSPRADYPGRLRSGRPADLAARADSVAWILKVRELYGMLPVTAYLAVSYMDRFLS 149
E ER HSPR DY RLR+G D R ++ WI K E P+ LA++Y+DRFLS
Sbjct: 44 EKERQHSPRDDYLKRLRNG-DLDFNVRIQALGWIWKACEELQFGPLCICLAMNYLDRFLS 102
Query: 150 LHRLPMEDA---------------------------------RYIFEHRTIFRMELLVLD 176
+H LP A ++FE +++ RMELLVL+
Sbjct: 103 VHDLPSGKAWTVQLLAVACLSLAAKIEETNVPELMQLQVGAPMFVFEAKSVQRMELLVLN 162
Query: 177 ALDWRLRSITPFTFMYLFADKVDPNGK--HIRELIHQATQTLSS 218
L WRLR++TP +++ F K++ + H R L+ ++ Q ++S
Sbjct: 163 VLRWRLRAVTPCSYVRYFLSKINGYDQEPHSR-LVTRSLQVIAS 205
>AT2G22490.2 | chr2:9554157-9555873 REVERSE LENGTH=363
Length = 362
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 81/157 (51%), Gaps = 38/157 (24%)
Query: 92 ERSHSPRADYPGRLRSGRPADLAARADSVAWILKVRELYGMLPVTAYLAVSYMDRFLSLH 151
E P DY RL SG DL+ R ++ WILKV Y + L+++Y+DRFL+ +
Sbjct: 74 EIEFCPGTDYVKRLLSG-DLDLSVRNQALDWILKVCAHYHFGHLCICLSMNYLDRFLTSY 132
Query: 152 RLP---------------------------------MEDARYIFEHRTIFRMELLVLDAL 178
LP +ED +++FE +TI RMELLV+ L
Sbjct: 133 ELPKDKDWAAQLLAVSCLSLASKMEETDVPHIVDLQVEDPKFVFEAKTIKRMELLVVTTL 192
Query: 179 DWRLRSITPFTFMYLFADKVDPNGKHIRE-LIHQATQ 214
+WRL+++TPF+F+ F DK+ H+ E LI+++++
Sbjct: 193 NWRLQALTPFSFIDYFVDKI---SGHVSENLIYRSSR 226
>AT5G65420.3 | chr5:26141592-26143750 REVERSE LENGTH=319
Length = 318
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 83/173 (47%), Gaps = 44/173 (25%)
Query: 90 EAERSHSPRADYPGRLRSGRPADLAARADSVAWILKVR----------ELYGMLPVTAYL 139
E E+ H P DY RLRSG R D++ WI K+R E++ P+ L
Sbjct: 52 EKEKQHLPSDDYIKRLRSGDLDLNVGRRDALNWIWKIRGLCRTDREACEVHQFGPLCFCL 111
Query: 140 AVSYMDRFLSLHRLP---------------------------------MEDARYIFEHRT 166
A++Y+DRFLS+H LP + D +++FE ++
Sbjct: 112 AMNYLDRFLSVHDLPSGKGWILQLLAVACLSLAAKIEETEVPMLIDLQVGDPQFVFEAKS 171
Query: 167 IFRMELLVLDALDWRLRSITPFTFMYLFADKVDPNGKH-IRELIHQATQTLSS 218
+ RMELLVL+ L WRLR+ITP +++ F K+ + LI ++ Q ++S
Sbjct: 172 VQRMELLVLNKLKWRLRAITPCSYIRYFLRKMSKCDQEPSNTLISRSLQVIAS 224
>AT5G67260.1 | chr5:26836313-26837665 FORWARD LENGTH=368
Length = 367
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 57/111 (51%), Gaps = 33/111 (29%)
Query: 113 LAARADSVAWILKVRELYGMLPVTAYLAVSYMDRFLS----------------------- 149
++ R +++ W+L+V+ YG +TA LAV+Y DRF++
Sbjct: 93 VSCRKEALDWVLRVKSHYGFTSLTAILAVNYFDRFMTSIKLQTDKPWMSQLVAVASLSLA 152
Query: 150 ----------LHRLPMEDARYIFEHRTIFRMELLVLDALDWRLRSITPFTF 190
L L +E+ARY+FE +TI RMELL+L L WR+ +TP +F
Sbjct: 153 AKVEEIQVPLLLDLQVEEARYLFEAKTIQRMELLILSTLQWRMHPVTPISF 203
>AT3G50070.1 | chr3:18565322-18566669 REVERSE LENGTH=362
Length = 361
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 53/109 (48%), Gaps = 33/109 (30%)
Query: 115 ARADSVAWILKVRELYGMLPVTAYLAVSYMDRFLS------------------------- 149
R ++ WI KV+ YG +TA LAV+Y DRF++
Sbjct: 85 CREKALDWIFKVKSHYGFNSLTALLAVNYFDRFITSRKFQTDKPWMSQLTALACLSLAAK 144
Query: 150 --------LHRLPMEDARYIFEHRTIFRMELLVLDALDWRLRSITPFTF 190
L +E+ARY+FE +TI RMELLVL LDWR+ +TP +F
Sbjct: 145 VEEIRVPFLLDFQVEEARYVFEAKTIQRMELLVLSTLDWRMHPVTPISF 193
>AT1G34460.1 | chr1:12595110-12599628 FORWARD LENGTH=492
Length = 491
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 11/113 (9%)
Query: 116 RADSVAWILKVRELYGMLPVTAYLAVSYMDRFLSLHRLP-----MEDARYI----FEHRT 166
RA + W+L+V + + T YL V+ +DRFL + +P + D Y+ + R
Sbjct: 304 RAILIDWLLEVHIKFELNLETLYLTVNIIDRFLYVKAVPKRELQVNDLVYVTDNAYSSRQ 363
Query: 167 IFRMELLVLDALDWRLRSITPFTFMYLF--ADKVDPNGKHIRELIHQATQTLS 217
I M+ +L L+W L T + F++ F A DP H+++ QA++T S
Sbjct: 364 ILVMKKAILGNLEWYLTIPTQYVFLFCFIKASISDPEVLHVQKKNLQASKTKS 416
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.325 0.137 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,452,611
Number of extensions: 150135
Number of successful extensions: 454
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 452
Number of HSP's successfully gapped: 10
Length of query: 291
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 193
Effective length of database: 8,419,801
Effective search space: 1625021593
Effective search space used: 1625021593
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 111 (47.4 bits)