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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0563700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cyclin.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.18 (0.0306) R2 : 0.689
β1 : -3.39 (0.112) R2dD : 0.653 R2D : 0.528
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.28 (0.142) R2dE : 0.0546 R2E : 0.00631
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.761 (0.0658) R2dN8 : 0.125 R2N8 : -0.0171
σ : 0.572
deviance : 150.68
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 12.56
memory length : 22
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 4.15
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
144.48 0.565 4.19 -3.44 0.268 1.41 -0.48 -1.73 -0.788 1.78 11.74 31 4 --
146.73 0.564 4.19 -3.43 0.28 1.43 -0.228 -- -0.789 2.25 12.35 27 4.06 --
144.98 0.561 4.19 -3.42 0.267 1.39 -- -1.41 -0.796 2.59 12.31 29 4.16 --
146.68 0.564 4.19 -3.42 0.273 1.34 -- -- -0.77 2.77 12.53 25 3.95 --
148.79 0.568 4.19 -3.41 -- 1.29 -- -1.51 -0.778 -- 12.53 24 4.28 --
167.74 0.607 4.16 -3.39 0.411 -- 0.162 -- -0.694 7.24 -- -- -- --
167.8 0.607 4.16 -3.38 0.412 -- -- -- -0.695 7.16 -- -- -- --
150.68 0.572 4.18 -3.39 -- 1.28 -- -- -0.761 -- 12.56 22 4.15 --
437.43 0.974 4.09 -- 0.213 1.38 -- -- -0.389 2.12 9.563 41 3.7 --
176.75 0.621 4.17 -3.37 -- -- -- -- -0.687 -- -- -- -- --
469.32 1.01 4.07 -- 0.381 -- -- -- -0.318 7.74 -- -- -- --
439.91 0.977 4.1 -- -- 1.4 -- -- -0.367 -- 9.959 34 3.85 --
477.16 1.02 4.08 -- -- -- -- -- -0.313 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 142.24 radiation 10.0 90 > th dose independent rect. 6 3
27 142.99 temperature 15.0 90 > th dose dependent rect. 6 3
30 143.89 temperature 20.0 90 > th dose independent rect. 6 3
31 143.95 radiation 1.0 90 > th dose dependent rect. 5 4
48 144.86 humidity 90.0 90 < th dose independent rect. 6 3
49 145.44 atmosphere 1000.0 90 > th dose dependent rect. 6 3
51 145.59 radiation 20.0 30 < th dose dependent sin 9 NA
69 146.27 radiation 10.0 30 > th dose independent sin 10 NA
90 147.04 temperature 20.0 10 > th dose dependent rect. 6 4
94 147.30 temperature 20.0 10 > th dose dependent rect. 7 2
99 147.58 wind 5.0 90 < th dose independent rect. 6 3
103 147.73 humidity 90.0 90 < th dose independent rect. 2 7
116 148.12 precipitation 0.1 90 < th dose independent rect. 6 3
117 148.12 precipitation 0.1 90 < th dose dependent rect. 6 3
119 148.17 wind 9.0 90 < th dose independent rect. 6 3
120 148.17 temperature 10.0 90 > th dose independent rect. 6 3
122 148.17 humidity 50.0 90 > th dose independent rect. 6 3
123 148.17 atmosphere 995.0 90 > th dose independent rect. 6 3
124 148.17 atmosphere 1015.0 90 < th dose independent rect. 6 3
125 148.17 temperature 10.0 90 > th dose independent rect. 9 21
158 148.32 temperature 25.0 90 > th dose dependent rect. 1 8
163 148.46 radiation 40.0 90 < th dose independent rect. 6 3
164 148.46 wind 9.0 90 < th dose dependent rect. 6 3
165 148.47 temperature 30.0 90 < th dose independent rect. 6 3
177 148.50 wind 1.0 90 > th dose independent rect. 6 3
185 148.59 temperature 10.0 270 > th dose dependent rect. 4 5
187 148.64 wind 9.0 90 < th dose independent rect. 9 21
204 148.71 temperature 10.0 90 > th dose dependent rect. 9 21
206 148.73 humidity 90.0 10 < th dose dependent rect. 6 3
209 148.85 precipitation 0.1 90 < th dose independent rect. 9 21
210 148.85 precipitation 0.1 90 < th dose dependent rect. 9 21
217 148.94 atmosphere 1005.0 90 > th dose independent rect. 6 3
227 149.11 atmosphere 995.0 90 > th dose independent rect. 9 21
244 149.38 wind 3.0 10 < th dose dependent rect. 8 1
258 149.48 atmosphere 1000.0 10 > th dose independent rect. 9 23
266 149.53 radiation 40.0 90 < th dose independent rect. 6 5
271 149.59 atmosphere 1005.0 10 > th dose independent rect. 8 1
321 150.10 atmosphere 1015.0 90 < th dose independent rect. 9 21
325 150.12 humidity 90.0 10 < th dose dependent rect. 8 1
349 150.25 atmosphere 1000.0 10 > th dose dependent rect. 8 1
361 150.33 wind 1.0 10 > th dose independent rect. 8 1
363 150.34 atmosphere 1015.0 10 < th dose dependent rect. 8 1
374 150.45 wind 7.0 10 < th dose independent rect. 8 1
376 150.45 temperature 10.0 10 > th dose independent rect. 8 1
378 150.45 temperature 30.0 10 < th dose independent rect. 8 1
379 150.45 humidity 50.0 10 > th dose independent rect. 8 1
382 150.45 atmosphere 1010.0 10 < th dose independent rect. 8 1
385 150.45 precipitation 0.1 10 < th dose independent rect. 8 1
387 150.45 temperature 10.0 10 > th dose independent rect. 9 23
388 150.45 wind 9.0 10 < th dose dependent rect. 8 1
389 150.45 precipitation 0.1 10 < th dose dependent rect. 8 1
398 150.50 temperature 30.0 30 < th dose dependent rect. 8 1
414 150.62 radiation 10.0 30 < th dose independent sin 9 NA
416 150.63 wind 5.0 10 < th dose independent rect. 6 4
451 150.83 wind 1.0 10 > th dose dependent rect. 8 1
455 150.85 atmosphere 995.0 270 > th dose dependent rect. 4 5
456 150.86 precipitation 0.1 270 < th dose independent rect. 4 5
459 150.86 precipitation 0.1 270 < th dose dependent rect. 4 5
460 150.87 humidity 50.0 4320 > th dose independent rect. 7 3
461 150.88 radiation 20.0 10 < th dose independent rect. 8 1
463 150.90 wind 7.0 270 < th dose independent rect. 4 5
473 150.96 temperature 30.0 270 < th dose independent rect. 4 5
499 151.03 radiation 30.0 30 < th dose dependent rect. 8 1
522 151.09 temperature 10.0 270 > th dose independent rect. 4 5
524 151.09 humidity 50.0 270 > th dose independent rect. 4 5
525 151.09 atmosphere 995.0 270 > th dose independent rect. 4 5
526 151.09 atmosphere 1015.0 270 < th dose independent rect. 4 5
527 151.09 temperature 10.0 270 > th dose independent rect. 9 19
532 151.10 wind 9.0 270 < th dose independent rect. 9 19
543 151.13 humidity 50.0 10 > th dose dependent rect. 8 1
544 151.13 wind 9.0 10 < th dose dependent rect. 6 4
547 151.13 atmosphere 1005.0 90 > th dose dependent rect. 1 8
667 151.44 atmosphere 995.0 270 > th dose independent rect. 9 19
669 151.46 wind 1.0 90 > th dose independent rect. 9 21
678 151.50 radiation 10.0 90 < th dose dependent rect. 21 11
685 151.53 temperature 15.0 10 > th dose independent rect. 10 20
696 151.60 atmosphere 1005.0 270 > th dose dependent rect. 5 1
701 151.62 temperature 10.0 1440 > th dose independent rect. 9 1
704 151.62 atmosphere 995.0 1440 > th dose independent rect. 9 1
707 151.62 atmosphere 1015.0 1440 < th dose independent rect. 9 1
708 151.62 temperature 10.0 1440 > th dose independent rect. 10 23
711 151.62 temperature 25.0 30 > th dose dependent rect. 20 13
712 151.63 temperature 10.0 90 > th dose dependent rect. 21 9
761 151.78 temperature 10.0 1440 > th dose independent rect. 7 3
768 151.78 atmosphere 995.0 1440 > th dose independent rect. 7 3
770 151.78 atmosphere 1015.0 1440 < th dose independent rect. 7 3
772 151.78 temperature 10.0 1440 > th dose independent rect. 10 21
775 151.78 radiation 1.0 30 > th dose dependent sin 10 NA
780 151.82 precipitation 0.1 270 < th dose independent rect. 9 19
781 151.82 precipitation 0.1 270 < th dose dependent rect. 9 19
783 151.83 precipitation 0.1 10 < th dose independent rect. 6 4
784 151.83 precipitation 0.1 10 < th dose dependent rect. 6 4
791 151.87 temperature 10.0 10 > th dose independent rect. 6 4
793 151.87 humidity 50.0 10 > th dose independent rect. 6 4
794 151.87 atmosphere 995.0 10 > th dose independent rect. 6 4
795 151.87 atmosphere 1015.0 10 < th dose independent rect. 6 4
812 151.90 radiation 1.0 90 < th dose independent sin 6 NA
839 152.02 precipitation 0.1 10 < th dose independent rect. 9 23
841 152.02 precipitation 0.1 10 < th dose dependent rect. 9 23
876 152.12 radiation 1.0 270 < th dose dependent rect. 21 15
895 152.20 wind 9.0 90 < th dose independent rect. 11 19
899 152.21 precipitation 0.1 10 < th dose independent rect. 10 20
902 152.21 precipitation 0.1 10 < th dose dependent rect. 10 20
914 152.24 atmosphere 1010.0 10 < th dose independent rect. 22 9
920 152.27 wind 1.0 10 > th dose independent rect. 6 4
939 152.30 wind 9.0 10 < th dose independent rect. 10 20
973 152.37 humidity 80.0 30 < th dose independent rect. 23 10
985 152.41 temperature 30.0 270 < th dose independent rect. 16 17
999 152.48 temperature 30.0 90 < th dose independent rect. 6 15
1000 152.48 atmosphere 995.0 10 > th dose independent rect. 10 20