Os06g0726800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : G2/mitotic-specific cyclin 2 (B-like cyclin) (CycOs2).
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Os06g0726800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : G2/mitotic-specific cyclin 2 (B-like cyclin) (CycOs2).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 200.16 | 0.665 | 3.16 | -1.39 | 0.389 | 0.708 | -0.612 | -4.03 | 0.0247 | 7.65 | 26.91 | 4392 | -- | -- |
| 204.59 | 0.666 | 3.07 | -0.935 | 0.401 | 0.743 | -0.519 | -- | 0.0606 | 7.54 | 19.5 | 26561 | -- | -- |
| 201.2 | 0.661 | 3.16 | -1.41 | 0.391 | 0.711 | -- | -4.07 | 0.026 | 7.5 | 26.92 | 4417 | -- | -- |
| 205.53 | 0.668 | 3.08 | -1.06 | 0.401 | 0.826 | -- | -- | 0.0319 | 7.58 | 19.5 | 26438 | -- | -- |
| 209.35 | 0.674 | 3.16 | -1.38 | -- | 0.702 | -- | -3.96 | 0.0358 | -- | 26.94 | 4404 | -- | -- |
| 212.81 | 0.684 | 3.01 | -0.205 | 0.381 | -- | -0.634 | -- | 0.323 | 7.53 | -- | -- | -- | -- |
| 213.91 | 0.685 | 3.01 | -0.221 | 0.382 | -- | -- | -- | 0.324 | 7.39 | -- | -- | -- | -- |
| 213.32 | 0.68 | 3.08 | -1.05 | -- | 0.816 | -- | -- | 0.0372 | -- | 19.5 | 26025 | -- | -- |
| 212.69 | 0.679 | 3.04 | -- | 0.407 | 0.331 | -- | -- | 0.262 | 7.21 | 25 | 8187 | -- | -- |
| 221.67 | 0.696 | 3.02 | -0.214 | -- | -- | -- | -- | 0.33 | -- | -- | -- | -- | -- |
| 215.2 | 0.686 | 3 | -- | 0.38 | -- | -- | -- | 0.348 | 7.42 | -- | -- | -- | -- |
| 219.19 | 0.69 | 3.03 | -- | -- | 0.278 | -- | -- | 0.248 | -- | 28 | 8649 | -- | -- |
| 222.88 | 0.697 | 3.01 | -- | -- | -- | -- | -- | 0.354 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 198.50 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 4 | 199.05 | temperature | 25 | 4320 | > th | dose dependent | rect. | 23 | 14 |
| 5 | 199.06 | temperature | 25 | 4320 | > th | dose dependent | rect. | 7 | 6 |
| 24 | 199.24 | temperature | 25 | 4320 | > th | dose dependent | rect. | 9 | 1 |
| 40 | 199.37 | temperature | 25 | 4320 | > th | dose dependent | sin | 6 | NA |
| 48 | 199.56 | temperature | 25 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 69 | 199.66 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 4 |
| 95 | 199.84 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 4 |
| 154 | 200.27 | temperature | 25 | 4320 | > th | dose independent | rect. | 1 | 11 |
| 189 | 200.42 | temperature | 25 | 4320 | < th | dose independent | rect. | 1 | 11 |
| 224 | 200.57 | humidity | 80 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 244 | 200.65 | temperature | 20 | 720 | > th | dose dependent | rect. | 2 | 1 |
| 247 | 200.67 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 2 |
| 267 | 200.75 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 4 |
| 271 | 200.78 | humidity | 90 | 43200 | > th | dose independent | rect. | 13 | 13 |
| 288 | 200.84 | humidity | 90 | 43200 | > th | dose dependent | rect. | 13 | 14 |
| 299 | 200.87 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 2 |
| 326 | 200.92 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 20 |
| 331 | 200.93 | humidity | 90 | 43200 | > th | dose independent | rect. | 20 | 5 |
| 332 | 200.93 | temperature | 25 | 4320 | > th | dose dependent | no | NA | NA |
| 358 | 200.93 | temperature | 25 | 4320 | > th | dose dependent | rect. | 15 | 23 |
| 376 | 200.97 | humidity | 90 | 43200 | > th | dose independent | sin | 16 | NA |
| 389 | 200.99 | humidity | 90 | 43200 | > th | dose independent | rect. | 17 | 9 |
| 426 | 201.04 | humidity | 90 | 43200 | < th | dose independent | rect. | 13 | 14 |
| 437 | 201.05 | humidity | 90 | 43200 | > th | dose dependent | sin | 15 | NA |
| 455 | 201.08 | temperature | 25 | 4320 | > th | dose dependent | rect. | 11 | 23 |
| 457 | 201.09 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 6 |
| 463 | 201.10 | temperature | 20 | 720 | > th | dose dependent | sin | 10 | NA |
| 471 | 201.11 | humidity | 90 | 43200 | < th | dose independent | rect. | 11 | 17 |
| 502 | 201.16 | temperature | 25 | 4320 | > th | dose independent | sin | 5 | NA |
| 549 | 201.23 | humidity | 90 | 43200 | < th | dose independent | sin | 16 | NA |
| 565 | 201.25 | humidity | 80 | 43200 | > th | dose independent | rect. | 13 | 2 |
| 614 | 201.31 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 9 |
| 650 | 201.35 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 18 |
| 658 | 201.36 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 665 | 201.36 | humidity | 90 | 43200 | > th | dose dependent | rect. | 18 | 14 |
| 683 | 201.38 | temperature | 25 | 4320 | < th | dose independent | sin | 5 | NA |
| 691 | 201.38 | humidity | 90 | 43200 | > th | dose dependent | rect. | 20 | 12 |
| 700 | 201.39 | radiation | 40 | 43200 | < th | dose independent | rect. | 13 | 19 |
| 811 | 201.47 | temperature | 25 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 833 | 201.49 | humidity | 90 | 43200 | > th | dose independent | rect. | 20 | 20 |
| 866 | 201.51 | humidity | 90 | 43200 | > th | dose dependent | no | NA | NA |
| 885 | 201.53 | humidity | 80 | 43200 | < th | dose independent | rect. | 13 | 2 |
| 888 | 201.53 | radiation | 40 | 43200 | < th | dose independent | rect. | 13 | 4 |
| 963 | 201.57 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 17 |
| 980 | 201.59 | temperature | 25 | 90 | > th | dose independent | rect. | 7 | 2 |
| 984 | 201.59 | humidity | 90 | 43200 | > th | dose independent | rect. | 17 | 18 |