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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0607600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Cyclin.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.92 (0.0347) R2 : 0.186
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.78 (0.148) R2dE : 0.199 R2E : 0.166
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.171 (0.0756) R2dN8 : 0.0201 R2N8 : -0.0136
σ : 0.639
deviance : 187.03
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 14.6
memory length : 1652
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
163.95 0.602 3.81 0.763 0.524 -1.25 -1.13 3.46 0.424 2.06 21.28 1429 -- --
178 0.626 3.93 -0.343 0.1 -1.53 1.58 -- 0.134 15.5 18.37 2271 -- --
168.4 0.604 3.81 0.788 0.49 -1.25 -- 3.39 0.428 1.62 21.4 1498 -- --
175.4 0.617 3.88 0.171 0.424 -1.45 -- -- 0.32 1.86 -43 7352 -- --
174.46 0.619 3.86 0.314 -- -1.45 -- 4.31 0.299 -- 21.32 1623 -- --
209.32 0.678 3.99 -0.678 0.45 -- -1.08 -- -0.118 2.11 -- -- -- --
213.57 0.684 3.99 -0.645 0.447 -- -- -- -0.111 1.67 -- -- -- --
184.48 0.635 3.93 -0.32 -- -1.68 -- -- 0.124 -- 14.6 1652 -- --
173.76 0.614 3.9 -- 0.504 -1.46 -- -- 0.308 1.78 -39.44 8602 -- --
225.76 0.702 3.98 -0.627 -- -- -- -- -0.101 -- -- -- -- --
224.55 0.701 3.97 -- 0.436 -- -- -- -0.0388 1.62 -- -- -- --
187.03 0.639 3.92 -- -- -1.78 -- -- 0.171 -- 14.6 1652 -- --
236.13 0.717 3.97 -- -- -- -- -- -0.0312 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 159.61 humidity 70 14400 < th dose dependent rect. 18 2
13 160.32 temperature 20 1440 > th dose dependent rect. 10 9
31 160.87 temperature 20 1440 > th dose dependent rect. 11 3
46 161.17 radiation 1 14400 > th dose dependent rect. 18 1
59 161.24 temperature 20 1440 > th dose dependent sin 22 NA
73 161.47 temperature 20 1440 > th dose dependent rect. 15 3
104 162.02 radiation 1 14400 > th dose independent rect. 18 11
116 162.09 radiation 1 14400 > th dose independent rect. 18 1
129 162.17 radiation 1 14400 < th dose independent rect. 18 11
155 162.53 radiation 1 14400 < th dose independent rect. 18 9
156 162.54 radiation 1 14400 < th dose independent rect. 18 2
162 162.56 radiation 1 14400 < th dose independent rect. 18 5
229 163.35 humidity 90 14400 < th dose independent rect. 20 6
230 163.38 humidity 90 14400 > th dose dependent rect. 21 5
236 163.44 humidity 90 14400 < th dose independent rect. 18 12
237 163.45 humidity 90 14400 < th dose independent rect. 18 10
262 163.65 radiation 10 14400 < th dose dependent rect. 18 11
295 163.89 radiation 1 4320 > th dose independent rect. 16 19
298 163.91 radiation 1 4320 < th dose independent rect. 16 19
371 164.23 radiation 30 14400 < th dose independent rect. 7 1
377 164.25 temperature 10 1440 > th dose dependent rect. 11 2
379 164.25 radiation 40 14400 < th dose dependent rect. 18 2
396 164.33 radiation 1 1440 < th dose dependent rect. 18 2
417 164.40 radiation 1 1440 < th dose dependent rect. 18 9
451 164.48 radiation 1 4320 > th dose independent rect. 16 3
469 164.50 radiation 1 1440 < th dose dependent rect. 18 7
479 164.53 radiation 10 14400 < th dose dependent rect. 18 5
481 164.54 radiation 30 14400 < th dose independent rect. 17 15
486 164.55 radiation 20 14400 < th dose dependent rect. 18 9
490 164.56 humidity 90 14400 < th dose independent sin 12 NA
491 164.56 radiation 30 14400 < th dose independent rect. 22 10
494 164.56 radiation 1 1440 < th dose dependent rect. 18 5
512 164.59 temperature 20 1440 > th dose dependent no NA NA
518 164.60 radiation 30 14400 < th dose independent rect. 19 13
525 164.61 humidity 60 14400 < th dose independent rect. 18 1
541 164.64 radiation 30 14400 < th dose independent rect. 24 8
549 164.66 atmosphere 1005 43200 > th dose independent rect. 16 1
550 164.66 radiation 30 14400 < th dose independent rect. 2 6
556 164.67 radiation 1 4320 < th dose dependent rect. 16 19
574 164.74 humidity 90 14400 > th dose independent rect. 21 6
609 164.85 humidity 90 43200 < th dose independent rect. 9 1
611 164.86 radiation 1 4320 > th dose independent sin 13 NA
615 164.87 humidity 90 14400 > th dose independent rect. 18 12
627 164.90 radiation 30 14400 > th dose independent rect. 7 1
666 164.98 radiation 1 4320 < th dose independent sin 13 NA
669 164.99 humidity 90 43200 > th dose independent rect. 9 1
673 165.00 radiation 1 4320 < th dose independent rect. 16 4
682 165.01 radiation 1 4320 < th dose independent rect. 16 11
686 165.02 radiation 1 4320 < th dose independent rect. 16 8
740 165.14 humidity 60 14400 < th dose independent rect. 17 3
742 165.14 humidity 60 14400 > th dose independent rect. 18 9
760 165.18 temperature 20 1440 > th dose dependent rect. 15 23
772 165.24 atmosphere 1005 43200 < th dose independent rect. 16 1
773 165.24 humidity 60 14400 > th dose independent rect. 18 7
798 165.28 humidity 60 14400 > th dose independent rect. 18 5
816 165.29 humidity 60 14400 > th dose independent rect. 18 13
820 165.30 humidity 60 14400 < th dose independent rect. 18 14
825 165.32 humidity 60 14400 > th dose independent rect. 18 2
855 165.36 humidity 90 14400 > th dose dependent rect. 18 13
860 165.38 radiation 1 4320 < th dose dependent rect. 16 14
889 165.46 humidity 50 14400 > th dose independent rect. 17 16
895 165.48 humidity 90 14400 > th dose dependent sin 13 NA
911 165.54 wind 9 43200 < th dose independent rect. 19 2
956 165.62 humidity 60 43200 > th dose independent rect. 16 1