Os01g0233500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin.
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Os01g0233500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.29 | 0.232 | 8.5 | -0.413 | 0.073 | 0.795 | -0.552 | 1.08 | 0.163 | 16.6 | 7.33 | 5450 | -- | -- |
| 25.07 | 0.233 | 8.55 | -0.658 | 0.0462 | 0.736 | -0.582 | -- | 0.0715 | 16.3 | 10.55 | 6544 | -- | -- |
| 25.03 | 0.233 | 8.51 | -0.409 | 0.0798 | 0.799 | -- | 1.13 | 0.16 | 18.4 | 7.004 | 5575 | -- | -- |
| 25.92 | 0.237 | 8.55 | -0.655 | 0.0529 | 0.73 | -- | -- | 0.0687 | 18.7 | 12.02 | 6494 | -- | -- |
| 25.26 | 0.234 | 8.51 | -0.452 | -- | 0.802 | -- | 0.992 | 0.129 | -- | 9.858 | 6462 | -- | -- |
| 34.17 | 0.274 | 8.51 | -0.298 | 0.0335 | -- | -0.598 | -- | 0.249 | 16.3 | -- | -- | -- | -- |
| 34.91 | 0.277 | 8.51 | -0.304 | 0.0731 | -- | -- | -- | 0.246 | 20.4 | -- | -- | -- | -- |
| 25.93 | 0.237 | 8.55 | -0.643 | -- | 0.627 | -- | -- | 0.0698 | -- | 17.3 | 6482 | -- | -- |
| 31.92 | 0.263 | 8.5 | -- | 0.0742 | 0.359 | -- | -- | 0.296 | 18.1 | 27 | 5374 | -- | -- |
| 35.2 | 0.277 | 8.51 | -0.305 | -- | -- | -- | -- | 0.245 | -- | -- | -- | -- | -- |
| 37.35 | 0.286 | 8.51 | -- | 0.0747 | -- | -- | -- | 0.279 | 20.1 | -- | -- | -- | -- |
| 31.89 | 0.263 | 8.5 | -- | -- | 0.349 | -- | -- | 0.277 | -- | 27.7 | 6541 | -- | -- |
| 37.65 | 0.286 | 8.5 | -- | -- | -- | -- | -- | 0.279 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.62 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 2 | 22.63 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 21 | 4 |
| 3 | 22.64 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 21 | 4 |
| 7 | 22.69 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 20 | 22.75 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 10 |
| 21 | 22.75 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 10 |
| 25 | 22.77 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 10 |
| 30 | 22.79 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 20 | 5 |
| 34 | 22.81 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 42 | 22.82 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 67 | 22.85 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 96 | 22.89 | temperature | 10.0 | 43200 | > th | dose dependent | rect. | 17 | 2 |
| 106 | 22.90 | temperature | 30.0 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 107 | 22.90 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 21 | 9 |
| 124 | 22.92 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 144 | 22.93 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 14 |
| 145 | 22.93 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 14 |
| 153 | 22.93 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 14 |
| 183 | 22.96 | humidity | 90.0 | 43200 | > th | dose independent | sin | 13 | NA |
| 218 | 22.98 | humidity | 90.0 | 43200 | < th | dose independent | sin | 15 | NA |
| 244 | 22.99 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 4 | 2 |
| 247 | 22.99 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 5 |
| 253 | 22.99 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 259 | 22.99 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 5 |
| 269 | 23.00 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 5 |
| 298 | 23.01 | humidity | 90.0 | 43200 | > th | dose dependent | sin | 13 | NA |
| 300 | 23.01 | temperature | 10.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 301 | 23.01 | temperature | 30.0 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 328 | 23.02 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 344 | 23.02 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 10 | 20 |
| 353 | 23.03 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 20 | 15 |
| 484 | 23.06 | precipitation | 0.1 | 43200 | < th | dose independent | sin | 14 | NA |
| 486 | 23.06 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 4 | 2 |
| 487 | 23.06 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 507 | 23.06 | precipitation | 0.1 | 43200 | < th | dose dependent | sin | 14 | NA |
| 539 | 23.07 | precipitation | 0.1 | 43200 | > th | dose independent | sin | 14 | NA |
| 552 | 23.07 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 13 |
| 553 | 23.07 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 13 |
| 594 | 23.07 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 13 |
| 609 | 23.07 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 5 | 21 |
| 613 | 23.08 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 4 | 2 |
| 614 | 23.08 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 732 | 23.09 | temperature | 10.0 | 43200 | > th | dose dependent | sin | 14 | NA |
| 735 | 23.09 | temperature | 30.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 796 | 23.10 | temperature | 30.0 | 43200 | < th | dose dependent | sin | 13 | NA |
| 815 | 23.10 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 10 | 9 |
| 826 | 23.10 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 12 |
| 858 | 23.11 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 8 |
| 884 | 23.11 | precipitation | 0.1 | 43200 | > th | dose dependent | sin | 11 | NA |
| 885 | 23.11 | temperature | 10.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 901 | 23.11 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 8 |
| 954 | 23.12 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 22 | 2 |
| 957 | 23.12 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 8 |
| 982 | 23.12 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 22 | 2 |