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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0581800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cyclin-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.6 (0.0444) R2 : 0.281
β1 : -1.48 (0.209) R2dD : 0.147 R2D : -0.0144
β2 : 1.17 (0.111) R2dC : 0.175 R2C : 0.173
β3 : -1.35 (0.206) R2dE : 0.132 R2E : -0.0454
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.112 (0.106) R2dN8 : 0.00363 R2N8 : -0.0153
σ : 0.798
deviance : 293.79
__
_____
C
peak time of C : 17.5
E
wheather : temperature
threshold : 19.37
memory length : 6156
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
291.21 0.802 4.53 -1.14 1.19 -1.62 -0.43 -1.67 -0.0463 17.5 19.9 4544 -- --
294.69 0.8 4.58 -1.28 1.17 -1.18 -0.504 -- -0.063 17.4 20.2 4582 -- --
289.64 0.793 4.54 -1.36 1.15 -1.77 -- -1.66 -0.0907 17.6 19.2 6194 -- --
293.79 0.798 4.6 -1.48 1.17 -1.35 -- -- -0.112 17.5 19.37 6156 -- --
360.37 0.884 4.51 -1.39 -- -1.83 -- -1.7 -0.108 -- 19.21 6299 -- --
321.03 0.84 4.52 -0.577 1.17 -- -0.319 -- 0.238 17.5 -- -- -- --
321.24 0.839 4.52 -0.576 1.17 -- -- -- 0.236 17.6 -- -- -- --
364.6 0.889 4.58 -1.51 -- -1.36 -- -- -0.152 -- 19.4 6241 -- --
314.14 0.825 4.5 -- 1.13 -0.707 -- -- 0.279 17.2 29.1 2259 -- --
392.33 0.926 4.5 -0.614 -- -- -- -- 0.208 -- -- -- -- --
330 0.85 4.5 -- 1.18 -- -- -- 0.301 17.6 -- -- -- --
378.45 0.906 4.48 -- -- -0.738 -- -- 0.267 -- 29.3 6329 -- --
402.27 0.936 4.49 -- -- -- -- -- 0.276 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 279.03 wind 7e+00 14400 > th dose dependent rect. 6 4
2 279.50 wind 7e+00 14400 > th dose independent rect. 5 5
3 279.55 wind 7e+00 14400 < th dose independent rect. 5 5
9 280.24 wind 5e+00 43200 < th dose independent rect. 8 2
10 280.36 radiation 1e+00 43200 < th dose dependent rect. 19 5
12 280.89 wind 7e+00 43200 < th dose dependent rect. 8 1
14 281.21 wind 5e+00 43200 < th dose independent rect. 19 14
20 281.42 wind 5e+00 43200 > th dose independent rect. 19 14
42 281.77 wind 5e+00 43200 < th dose independent sin 9 NA
58 281.87 wind 5e+00 43200 > th dose independent sin 9 NA
92 282.18 wind 3e+00 43200 > th dose dependent rect. 20 13
107 282.33 wind 3e+00 43200 > th dose dependent rect. 20 10
119 282.39 wind 1e+00 43200 < th dose dependent rect. 24 15
135 282.54 wind 1e+00 43200 > th dose dependent rect. 8 1
154 282.73 precipitation 1e-01 43200 > th dose dependent rect. 20 12
180 282.91 precipitation 1e-01 43200 > th dose independent rect. 20 12
185 282.94 precipitation 1e-01 43200 < th dose independent rect. 20 12
186 282.94 precipitation 1e-01 43200 < th dose dependent rect. 20 12
211 283.09 wind 3e+00 43200 > th dose dependent sin 9 NA
223 283.15 precipitation 1e-01 43200 > th dose independent rect. 22 14
225 283.16 precipitation 1e-01 43200 < th dose independent rect. 22 14
226 283.16 precipitation 1e-01 43200 < th dose dependent rect. 22 14
237 283.21 radiation 1e+01 4320 > th dose independent rect. 17 13
240 283.22 precipitation 1e-01 43200 > th dose dependent sin 8 NA
244 283.23 precipitation 1e-01 43200 > th dose dependent rect. 22 14
250 283.25 precipitation 1e-01 43200 > th dose independent sin 8 NA
253 283.27 precipitation 1e-01 43200 < th dose independent sin 8 NA
255 283.27 precipitation 1e-01 43200 < th dose dependent sin 8 NA
296 283.52 precipitation 1e-01 43200 < th dose independent rect. 22 9
297 283.52 precipitation 1e-01 43200 < th dose dependent rect. 22 9
314 283.57 precipitation 1e-01 43200 > th dose independent rect. 22 9
329 283.63 wind 3e+00 43200 > th dose dependent rect. 2 9
363 283.73 humidity 9e+01 43200 > th dose dependent rect. 17 1
411 283.85 precipitation 1e-01 43200 > th dose dependent rect. 22 9
427 283.92 radiation 4e+01 4320 < th dose dependent rect. 17 1
434 283.95 radiation 1e+01 4320 < th dose independent rect. 16 15
437 283.96 precipitation 1e-01 43200 > th dose independent rect. 17 15
444 284.01 precipitation 1e-01 43200 < th dose independent rect. 17 15
446 284.01 precipitation 1e-01 43200 < th dose dependent rect. 17 15
477 284.11 radiation 1e+01 4320 > th dose independent rect. 17 1
496 284.13 atmosphere 1e+03 43200 < th dose dependent rect. 7 2
515 284.22 radiation 1e+01 14400 < th dose dependent rect. 16 3
517 284.22 radiation 1e+01 14400 < th dose dependent rect. 16 6
533 284.25 radiation 1e+00 4320 > th dose dependent rect. 17 1
534 284.25 radiation 1e+01 14400 < th dose dependent rect. 16 12
550 284.31 wind 7e+00 43200 < th dose dependent rect. 3 1
565 284.35 wind 1e+00 43200 < th dose dependent rect. 24 21
605 284.47 atmosphere 1e+03 43200 < th dose dependent rect. 6 5
621 284.50 radiation 3e+01 4320 < th dose dependent rect. 17 5
644 284.56 wind 1e+00 43200 < th dose dependent sin 4 NA
657 284.59 precipitation 1e-01 43200 > th dose independent rect. 6 6
663 284.60 precipitation 1e-01 43200 > th dose dependent rect. 6 6
664 284.60 radiation 4e+01 14400 < th dose dependent rect. 17 7
679 284.63 precipitation 1e-01 43200 < th dose independent rect. 6 6
683 284.63 precipitation 1e-01 43200 < th dose dependent rect. 6 6
685 284.63 precipitation 1e-01 43200 > th dose dependent rect. 17 15
688 284.64 wind 1e+00 43200 > th dose dependent rect. 3 1
704 284.66 precipitation 1e-01 43200 > th dose independent rect. 1 4
741 284.72 precipitation 1e-01 43200 > th dose dependent rect. 17 18
773 284.79 radiation 1e+01 4320 > th dose independent rect. 16 15
776 284.81 wind 3e+00 43200 > th dose dependent rect. 21 4
805 284.88 precipitation 1e-01 43200 < th dose independent rect. 1 4
808 284.88 precipitation 1e-01 43200 < th dose dependent rect. 1 4
847 284.99 precipitation 1e-01 43200 > th dose dependent rect. 2 16
851 285.02 precipitation 1e-01 43200 < th dose independent rect. 5 8
853 285.02 precipitation 1e-01 43200 < th dose dependent rect. 5 8
867 285.04 wind 1e+00 43200 < th dose dependent rect. 20 21
873 285.06 precipitation 1e-01 43200 > th dose dependent rect. 23 19
966 285.30 wind 1e+00 43200 < th dose dependent rect. 3 10
994 285.37 wind 1e+00 43200 < th dose dependent rect. 3 12