BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0191400 Os03g0191400|Os03g0191400
(189 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0191400 Similar to GTP-binding protein ryh1 393 e-110
Os07g0496000 Similar to Nt-rab6 protein 220 4e-58
Os03g0151900 Similar to Small GTP-binding protein 83 9e-17
Os10g0441800 Similar to RAB5B 81 4e-16
Os05g0280200 Similar to Ras-related protein Rab11A 80 6e-16
Os07g0634200 Similar to Rab GTP-binding protein Rab11a 80 9e-16
Os12g0631100 Ras small GTPase, Ras type family protein 80 1e-15
Os03g0666500 Similar to Ras-related protein RHA1 78 3e-15
Os04g0470100 Similar to Small GTP binding protein Rab2 75 3e-14
Os10g0377400 Similar to Ras-related protein Rab11D 75 3e-14
Os07g0239400 Similar to Ethylene-responsive small GTP-bindi... 72 3e-13
Os05g0461300 Similar to RAB8C 71 5e-13
Os10g0208000 70 1e-12
Os03g0819900 Similar to RAB8C 67 6e-12
>Os03g0191400 Similar to GTP-binding protein ryh1
Length = 189
Score = 393 bits (1009), Expect = e-110, Method: Compositional matrix adjust.
Identities = 189/189 (100%), Positives = 189/189 (100%)
Query: 1 MAPVVSALAKYKLVFLGDQAVGKTAIITRFMYDKFDATYQGYSWAGEVPELDPKLHQGFF 60
MAPVVSALAKYKLVFLGDQAVGKTAIITRFMYDKFDATYQGYSWAGEVPELDPKLHQGFF
Sbjct: 1 MAPVVSALAKYKLVFLGDQAVGKTAIITRFMYDKFDATYQGYSWAGEVPELDPKLHQGFF 60
Query: 61 CGSDCLRYRQSFLSISKWIEEVNTQRGGDVIIVLVGNKTDLVDKRQISTDEGEAKAQEHG 120
CGSDCLRYRQSFLSISKWIEEVNTQRGGDVIIVLVGNKTDLVDKRQISTDEGEAKAQEHG
Sbjct: 61 CGSDCLRYRQSFLSISKWIEEVNTQRGGDVIIVLVGNKTDLVDKRQISTDEGEAKAQEHG 120
Query: 121 AMFMETSAKAGFNIKPLFRKIAASLPGMEALSSAKQEDMVDINLRPAASGQIPSGAEAQE 180
AMFMETSAKAGFNIKPLFRKIAASLPGMEALSSAKQEDMVDINLRPAASGQIPSGAEAQE
Sbjct: 121 AMFMETSAKAGFNIKPLFRKIAASLPGMEALSSAKQEDMVDINLRPAASGQIPSGAEAQE 180
Query: 181 EQKAGGCSC 189
EQKAGGCSC
Sbjct: 181 EQKAGGCSC 189
>Os07g0496000 Similar to Nt-rab6 protein
Length = 208
Score = 220 bits (561), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 126/215 (58%), Positives = 148/215 (68%), Gaps = 33/215 (15%)
Query: 1 MAPVVSALAKYKLVFLGDQAVGKTAIITRFMYDKFDATYQ---GYSWAGEVPELDPK--- 54
MAPV SALAKYKLVFLGDQ+VGKT+IITRFMYDKFD TYQ G + + L+ +
Sbjct: 1 MAPV-SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVR 59
Query: 55 LHQGFFCGSDCLRY--------------------RQSFLSISKWIEEVNTQRGGDVIIVL 94
L G + R RQSFL+ SKWIEEV T+RG DVIIVL
Sbjct: 60 LQLWDTAGQERFRSLIPSYIRDSSVAVIVFDVASRQSFLNTSKWIEEVRTERGSDVIIVL 119
Query: 95 VGNKTDLVDKRQISTDEGEAKAQEHGAMFMETSAKAGFNIKPLFRKIAASLPGMEALSSA 154
VGNKTDLVDKRQ+S +EGE KA++ G MF+ETSAKAGFNIK LFRKIAA+LPGME LSSA
Sbjct: 120 VGNKTDLVDKRQVSIEEGEGKAKDLGVMFIETSAKAGFNIKALFRKIAAALPGMETLSSA 179
Query: 155 KQEDMVDINLRPAASGQIPSGAEAQEEQKAGGCSC 189
KQEDMVD+NL+ + + +Q + +AGGCSC
Sbjct: 180 KQEDMVDVNLKSSNA------NSSQSQAQAGGCSC 208
>Os03g0151900 Similar to Small GTP-binding protein
Length = 199
Score = 83.2 bits (204), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 80/164 (48%), Gaps = 27/164 (16%)
Query: 10 KYKLVFLGDQAVGKTAIITRFMYDKFDATYQ---GYSWAGEVPELDPKLHQGF------- 59
+ KLV LGD VGK+ I+ RF+ +FD T + G S+ + L+ F
Sbjct: 31 RAKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTLALEDSTIVKFEIWDTAG 90
Query: 60 ---FCGSDCLRYR--------------QSFLSISKWIEEVNTQRGGDVIIVLVGNKTDLV 102
+ L YR +SF W++E+ D+I+VLVGNK DL
Sbjct: 91 QERYAALAPLYYRGAAAAVVVYDITSPESFSKAQYWVKELQKHGSPDIIMVLVGNKADLH 150
Query: 103 DKRQISTDEGEAKAQEHGAMFMETSAKAGFNIKPLFRKIAASLP 146
+ R +S+ E + A+++ +F+ETSAK NI +F +IA LP
Sbjct: 151 ENRHVSSQEAQEYAEKNNMVFIETSAKTADNINQVFEEIAKRLP 194
>Os10g0441800 Similar to RAB5B
Length = 250
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 77/164 (46%), Gaps = 27/164 (16%)
Query: 10 KYKLVFLGDQAVGKTAIITRFMYDKFDATYQ---GYSWAGEVPELDPKLHQGF------- 59
+ KLV LGD VGK+ I+ RF+ +FD T + G S+ + L+ F
Sbjct: 82 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTLALEDSTTVKFEIWDTAG 141
Query: 60 ---FCGSDCLRYR--------------QSFLSISKWIEEVNTQRGGDVIIVLVGNKTDLV 102
+ L YR +SF W++E+ D+I+ LVGNK DL
Sbjct: 142 QERYAALAPLYYRGAGAAIVVYDITSSESFNKAQYWVKELQKHGSPDMIMALVGNKADLH 201
Query: 103 DKRQISTDEGEAKAQEHGAMFMETSAKAGFNIKPLFRKIAASLP 146
D R +S+ + + A+ + F+ETSAK NI LF +IA LP
Sbjct: 202 DNRSVSSQDAQEYAERNTMFFIETSAKTADNINQLFEEIAKRLP 245
>Os05g0280200 Similar to Ras-related protein Rab11A
Length = 217
Score = 80.5 bits (197), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 80/164 (48%), Gaps = 26/164 (15%)
Query: 11 YKLVFLGDQAVGKTAIITRFMYDKFD--------------------ATYQGYSWAGEVPE 50
+K+V +GD VGK+ I++RF + F T + W E
Sbjct: 13 FKMVLIGDSGVGKSNILSRFTRNHFSLDSKSTIGVEFATKSLQMEGKTIKAQIWDTAGQE 72
Query: 51 LDPKLHQGFFCGS--DCLRY----RQSFLSISKWIEEVNTQRGGDVIIVLVGNKTDLVDK 104
+ ++ G+ L Y RQSF ++ +W+ E+ ++I++VGNK+DL+
Sbjct: 73 RYRAITSAYYRGAVGALLVYDITKRQSFDNVHRWLRELRDHADSSIVIMMVGNKSDLIHL 132
Query: 105 RQISTDEGEAKAQEHGAMFMETSAKAGFNIKPLFRKIAASLPGM 148
R +S DEG+A A++ G F+ETSA N++ F+ I + G+
Sbjct: 133 RAVSEDEGKALAEKEGLFFLETSAMEAVNVEEAFQTIITEVYGI 176
>Os07g0634200 Similar to Rab GTP-binding protein Rab11a
Length = 220
Score = 80.1 bits (196), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 84/165 (50%), Gaps = 28/165 (16%)
Query: 11 YKLVFLGDQAVGKTAIITRFMYDKF---DATYQGYSWAGEVPELDPK------------- 54
+K+V LGD +VGK+ ++ RF ++F + G + + +D K
Sbjct: 15 FKIVLLGDSSVGKSNLLARFARNEFYPNSKSTIGVEFQTQKLVIDGKEIKAQIWDTAGQE 74
Query: 55 ----LHQGFFCGS-------DCLRYRQSFLSISKWIEEVNTQRGGDVIIVLVGNKTDLVD 103
+ ++ G+ D R RQ+F S+ +W+ E++T +V+ +LVGNKTDL
Sbjct: 75 RFRAVTSAYYRGAVGALLVYDISR-RQTFDSVGRWLNELHTHSDMNVVTILVGNKTDLKH 133
Query: 104 KRQISTDEGEAKAQEHGAMFMETSAKAGFNIKPLFRKIAASLPGM 148
R++ST EG+A A+ G FMETSA N+ F+ + + G+
Sbjct: 134 AREVSTAEGKALAESQGLFFMETSALDSSNVAEAFQTVVKEIYGI 178
>Os12g0631100 Ras small GTPase, Ras type family protein
Length = 203
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 85/186 (45%), Gaps = 36/186 (19%)
Query: 12 KLVFLGDQAVGKTAIITRFMYDKF--------------------DATYQGYSWAGEVPEL 51
KLV LGD GK++++ RF+ +F D T + W E
Sbjct: 13 KLVLLGDVGTGKSSLVLRFVKGQFVEFQESTIGAAFFSQTLAVNDETVKFEIWDTAGQER 72
Query: 52 DPKLHQGFFCGSDC------LRYRQSFLSISKWIEEVNTQRGGDVIIVLVGNKTDLVDKR 105
L ++ G+ + SF KW++E+ Q + I+ L GNK D+V+ R
Sbjct: 73 YHSLAPMYYRGAAAAIVVYDITNAASFTRAKKWVQELQAQGNPNTIMALAGNKADMVEAR 132
Query: 106 QISTDEGEAKAQEHGAMFMETSAKAGFNIKPLFRKIAASLPGMEALSSAKQED----MVD 161
Q+ +E + AQE+G FMETSAK N+ +F +IA L L + +D MV
Sbjct: 133 QVPAEEAKTYAQENGLFFMETSAKTAINVNDVFHEIAKRL-----LQGQQAQDTPAGMV- 186
Query: 162 INLRPA 167
+N RPA
Sbjct: 187 LNQRPA 192
>Os03g0666500 Similar to Ras-related protein RHA1
Length = 203
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 77/162 (47%), Gaps = 30/162 (18%)
Query: 12 KLVFLGDQAVGKTAIITRFMYDKF--------------------DATYQGYSW--AGE-- 47
KLV LGD GK++++ RF+ +F D T + W AG+
Sbjct: 13 KLVLLGDVGAGKSSLVLRFVKGQFVEFQESTIGAAFFSQTLAVNDETVKFEIWDTAGQER 72
Query: 48 VPELDPKLHQGFFCGSDCLRYR----QSFLSISKWIEEVNTQRGGDVIIVLVGNKTDLVD 103
L P ++G + + Y SF KW++E+ Q ++ L GNK DL++
Sbjct: 73 YHSLAPMYYRG--AAAAIVVYDITNPASFTRAKKWVQELQAQGNSSTVVALAGNKADLLE 130
Query: 104 KRQISTDEGEAKAQEHGAMFMETSAKAGFNIKPLFRKIAASL 145
RQ+ +E + AQE+G FMETSAK N+ +F +IA L
Sbjct: 131 TRQVQIEEAKTYAQENGLFFMETSAKTATNVNDIFYEIAKRL 172
>Os04g0470100 Similar to Small GTP binding protein Rab2
Length = 211
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 81/162 (50%), Gaps = 28/162 (17%)
Query: 11 YKLVFLGDQAVGKTAIITRFMYDKFDATYQ---GYSWAGEVPELDPK------------- 54
+K + +GD VGK+ ++ +F +F + G + + +D +
Sbjct: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITVDSRPVKLQIWDTAGQE 66
Query: 55 ----LHQGFFCGS-------DCLRYRQSFLSISKWIEEVNTQRGGDVIIVLVGNKTDLVD 103
+ + ++ G+ D R R++F ++ W+E+ ++ I+LVGNK+DL
Sbjct: 67 SFRSITRSYYRGAAGALLVYDITR-RETFNHLASWLEDARQHANANMTIMLVGNKSDLSH 125
Query: 104 KRQISTDEGEAKAQEHGAMFMETSAKAGFNIKPLFRKIAASL 145
+R +S +EGE A+EHG +FME SAK N++ F K A ++
Sbjct: 126 RRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAGAI 167
>Os10g0377400 Similar to Ras-related protein Rab11D
Length = 216
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 101/212 (47%), Gaps = 42/212 (19%)
Query: 11 YKLVFLGDQAVGKTAIITRFMYDKFDATYQ---GYSWAGEVPELDPK------------- 54
+K+V +GD AVGK+ I+ RF ++F + G + +D K
Sbjct: 11 FKVVLIGDSAVGKSQILARFARNEFSIDSKATIGVEFQTRTLLIDHKSVKAQIWDTAGQE 70
Query: 55 ----LHQGFFCGS--DCLRY----RQSFLSISKWIEEVNTQRGGDVIIVLVGNKTDLVDK 104
+ ++ G+ L Y RQSF I +W+EE+ +++I+LVGNK+DL D+
Sbjct: 71 RYRAVTSAYYRGALGALLVYDITKRQSFDHIPRWLEELRGHADKNIVIMLVGNKSDLEDE 130
Query: 105 RQISTDEGEAKAQEHGAMFMETSAKAGFNIKPLFRKIAASLPGMEALSSAKQEDMVDINL 164
R +ST++ + A++ F+ETSA N++ F+ + + + + +K+ D
Sbjct: 131 RAVSTEDAKEFAEKENLFFLETSALQATNVENAFQTVLSEIFKIH----SKKNMAAD--- 183
Query: 165 RPAASGQIPSGA--------EAQEEQKAGGCS 188
P A+G PS A AQE K+ CS
Sbjct: 184 -PKANGAAPSLAGKKVVVPGPAQEIPKSKCCS 214
>Os07g0239400 Similar to Ethylene-responsive small GTP-binding protein
Length = 215
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 88/203 (43%), Gaps = 33/203 (16%)
Query: 12 KLVFLGDQAVGKTAIITRFMYDKFDATYQ---GYSWAGEVPELD---PKLHQGFFCGSDC 65
KL+ +GD VGK+ ++ RF F ++ G + ELD KL G +
Sbjct: 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
Query: 66 LR------YR--------------QSFLSISKWIEEVNTQRGGDVIIVLVGNKTDLVD-K 104
R YR SF +I WI + +V +LVGNK D+ + K
Sbjct: 77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESK 136
Query: 105 RQISTDEGEAKAQEHGAMFMETSAKAGFNIKPLFRKIAASLPGMEALSSAKQEDMVDINL 164
R + T +G+A A E+G F ETSAK N++ +F IA + A + +K ED
Sbjct: 137 RAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLAETDSKTED------ 190
Query: 165 RPAASGQIPSGAEAQEEQKAGGC 187
R + AEA QK+ C
Sbjct: 191 RTIKINKPEGDAEATTLQKSACC 213
>Os05g0461300 Similar to RAB8C
Length = 216
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 90/200 (45%), Gaps = 35/200 (17%)
Query: 12 KLVFLGDQAVGKTAIITRFMYDKFDATYQ---GYSWAGEVPELD---PKLHQGFFCGSDC 65
KL+ +GD VGK+ ++ RF F ++ G + ELD KL G +
Sbjct: 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
Query: 66 LR------YR--------------QSFLSISKWIEEVNTQRGGDVIIVLVGNKTDLVD-K 104
R YR SF +I WI + +V +LVGNK D+ + K
Sbjct: 77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESK 136
Query: 105 RQISTDEGEAKAQEHGAMFMETSAKAGFNIKPLFRKIAASLPGMEALSSAKQED-MVDIN 163
R + T +G+A A E+G F ETSAK N++ +F IA + A + +K ED + IN
Sbjct: 137 RAVPTAKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLAETDSKPEDKTIKIN 196
Query: 164 L-------RPAASGQIPSGA 176
+PAASG G+
Sbjct: 197 NKTDQGADKPAASGSACCGS 216
>Os10g0208000
Length = 355
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 70/146 (47%), Gaps = 17/146 (11%)
Query: 10 KYKLVFLGDQAVGKTAIITRFMYDKF---DATYQGYSWAGEVPELD---PKLHQGFFCGS 63
++K V +GD VGK+ ++ +F +F + G + V +D KL G
Sbjct: 8 RFKFVTIGDAGVGKSCLLLQFTDKRFREVEDLTTGVEYGACVVAVDGKNTKLQIWDTAGQ 67
Query: 64 DCLR------YRQS-----FLSISKWIEEVNTQRGGDVIIVLVGNKTDLVDKRQISTDEG 112
+ R YR + I+ W+E+ + I+L+GNK DL +R +S EG
Sbjct: 68 EAFRCITRSYYRGNAACLLVYDITSWLEDATQHASARMTIILIGNKCDLSHRRVVSYQEG 127
Query: 113 EAKAQEHGAMFMETSAKAGFNIKPLF 138
E A+EHG +FME SAK N++ F
Sbjct: 128 EQFAKEHGLLFMEASAKTAHNVEKAF 153
>Os03g0819900 Similar to RAB8C
Length = 214
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 79/174 (45%), Gaps = 27/174 (15%)
Query: 12 KLVFLGDQAVGKTAIITRFMYDKFDATYQ---GYSWAGEVPELD---PKLHQGFFCGSDC 65
KL+ +GD VGK+ ++ RF F ++ G + ELD KL G +
Sbjct: 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTVELDGKRIKLQIWDTAGQER 76
Query: 66 LR------YR--------------QSFLSISKWIEEVNTQRGGDVIIVLVGNKTDLVD-K 104
R YR SF +I WI + +V +LVGNK D+ + K
Sbjct: 77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESK 136
Query: 105 RQISTDEGEAKAQEHGAMFMETSAKAGFNIKPLFRKIAASLPGMEALSSAKQED 158
R + T +G+A A E+G F ETSAK N++ +F IA + + + +K ED
Sbjct: 137 RAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLSETDSKPED 190
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.133 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,333,035
Number of extensions: 243947
Number of successful extensions: 693
Number of sequences better than 1.0e-10: 15
Number of HSP's gapped: 691
Number of HSP's successfully gapped: 16
Length of query: 189
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 94
Effective length of database: 12,075,471
Effective search space: 1135094274
Effective search space used: 1135094274
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 153 (63.5 bits)