Os03g0191400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to GTP-binding protein ryh1.
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Os03g0191400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to GTP-binding protein ryh1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 91.2 | 0.449 | 8.37 | -0.391 | 0.533 | -0.472 | -0.441 | -4.73 | 0.15 | 5.58 | 8.473 | 1670 | -- | -- |
| 101.15 | 0.468 | 8.26 | 0.608 | 0.401 | -0.669 | -0.602 | -- | 0.34 | 5.68 | 25.6 | 900 | -- | -- |
| 91.57 | 0.446 | 8.36 | -0.393 | 0.541 | -0.47 | -- | -4.71 | 0.152 | 5.62 | 7.775 | 1590 | -- | -- |
| 99.84 | 0.465 | 8.24 | 0.679 | 0.468 | -0.768 | -- | -- | 0.396 | 4.19 | 25 | 929 | -- | -- |
| 105.72 | 0.479 | 8.37 | -0.345 | -- | -0.542 | -- | -4.64 | 0.179 | -- | 10.41 | 1847 | -- | -- |
| 113.84 | 0.5 | 8.25 | 0.489 | 0.537 | -- | -0.431 | -- | 0.332 | 5.7 | -- | -- | -- | -- |
| 114.3 | 0.501 | 8.25 | 0.486 | 0.535 | -- | -- | -- | 0.333 | 5.76 | -- | -- | -- | -- |
| 104.99 | 0.477 | 8.24 | 0.669 | -- | -0.914 | -- | -- | 0.444 | -- | 24 | 455 | -- | -- |
| 111.14 | 0.491 | 8.26 | -- | 0.485 | -0.586 | -- | -- | 0.309 | 4.62 | 25.4 | 920 | -- | -- |
| 129.13 | 0.531 | 8.26 | 0.503 | -- | -- | -- | -- | 0.346 | -- | -- | -- | -- | -- |
| 120.53 | 0.514 | 8.26 | -- | 0.542 | -- | -- | -- | 0.279 | 5.72 | -- | -- | -- | -- |
| 116.31 | 0.502 | 8.26 | -- | -- | -0.809 | -- | -- | 0.348 | -- | 24.5 | 441 | -- | -- |
| 135.8 | 0.544 | 8.27 | -- | -- | -- | -- | -- | 0.29 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 91.57 | temperature | 10 | 1440 | > th | dose dependent | rect. | 6 | 22 |
| 10 | 91.64 | temperature | 10 | 1440 | > th | dose dependent | rect. | 24 | 21 |
| 17 | 91.65 | temperature | 10 | 1440 | > th | dose dependent | rect. | 12 | 23 |
| 18 | 91.65 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 47 | 91.68 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 48 | 91.69 | temperature | 10 | 1440 | > th | dose dependent | no | NA | NA |
| 84 | 91.71 | temperature | 10 | 1440 | > th | dose dependent | rect. | 9 | 23 |
| 166 | 91.81 | temperature | 10 | 1440 | > th | dose dependent | rect. | 24 | 16 |
| 173 | 91.82 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 14 |
| 203 | 91.84 | temperature | 10 | 1440 | > th | dose dependent | sin | 3 | NA |
| 331 | 92.08 | temperature | 10 | 1440 | > th | dose dependent | sin | 17 | NA |
| 399 | 92.21 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 2 |
| 424 | 92.27 | temperature | 15 | 270 | > th | dose dependent | rect. | 7 | 22 |
| 425 | 92.28 | temperature | 15 | 1440 | > th | dose dependent | rect. | 6 | 2 |
| 533 | 92.61 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 21 |
| 559 | 92.71 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 22 |
| 570 | 92.73 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 18 |
| 591 | 92.76 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 22 |
| 613 | 92.80 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 5 |
| 614 | 92.80 | temperature | 15 | 1440 | > th | dose dependent | rect. | 5 | 6 |
| 634 | 92.83 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 16 |
| 643 | 92.85 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 22 |
| 654 | 92.87 | temperature | 30 | 1440 | < th | dose dependent | no | NA | NA |
| 673 | 92.89 | temperature | 30 | 1440 | < th | dose dependent | rect. | 22 | 23 |
| 704 | 92.94 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 738 | 93.00 | temperature | 30 | 1440 | < th | dose dependent | rect. | 9 | 23 |
| 741 | 93.01 | temperature | 30 | 1440 | < th | dose dependent | sin | 5 | NA |
| 825 | 93.13 | temperature | 30 | 1440 | < th | dose dependent | rect. | 2 | 12 |
| 875 | 93.23 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 4 |
| 998 | 93.42 | temperature | 30 | 1440 | < th | dose dependent | sin | 16 | NA |