BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0699300 Os02g0699300|AK067761
(124 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0699300 Similar to ADP-ribosylation factor-like protein 254 8e-69
Os10g0580200 Similar to ADP-ribosylation factor-like protein 178 7e-46
Os02g0128600 Similar to ADP-ribosylation factor-like protein 163 2e-41
Os06g0114200 152 7e-38
AK062677 144 1e-35
Os01g0813400 Similar to ADP-ribosylation factor 1 144 2e-35
Os05g0489600 Similar to ADP-ribosylation factor 1 144 2e-35
Os07g0223400 Similar to ADP-ribosylation factor 1 143 2e-35
Os03g0811900 Similar to ADP-ribosylation factor 142 5e-35
Os01g0265100 Similar to ADP-ribosylation factor 142 5e-35
Os08g0248900 Similar to ADP-ribosylation factor 3 124 2e-29
Os11g0586900 Similar to ADP-ribosylation factor-like protein 5 97 3e-21
Os02g0327100 Similar to ARL2 G-protein 83 4e-17
Os03g0392300 Similar to GTP-binding protein-like 64 2e-11
Os03g0200800 ADP-ribosylation factor family protein 62 8e-11
>Os02g0699300 Similar to ADP-ribosylation factor-like protein
Length = 124
Score = 254 bits (650), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 124/124 (100%), Positives = 124/124 (100%)
Query: 1 MGQAFRKLFDAFFGTSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60
MGQAFRKLFDAFFGTSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN
Sbjct: 1 MGQAFRKLFDAFFGTSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60
Query: 61 VMFTVWDVGGQEKLRPLWRHYFNNTDGLVCFVSFVVIFLGIRERFVHRCIKEGKKWLFDF 120
VMFTVWDVGGQEKLRPLWRHYFNNTDGLVCFVSFVVIFLGIRERFVHRCIKEGKKWLFDF
Sbjct: 61 VMFTVWDVGGQEKLRPLWRHYFNNTDGLVCFVSFVVIFLGIRERFVHRCIKEGKKWLFDF 120
Query: 121 DRLV 124
DRLV
Sbjct: 121 DRLV 124
>Os10g0580200 Similar to ADP-ribosylation factor-like protein
Length = 192
Score = 178 bits (452), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 85/93 (91%), Positives = 87/93 (93%)
Query: 1 MGQAFRKLFDAFFGTSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60
MGQAFRKLFDAFFG EMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN
Sbjct: 1 MGQAFRKLFDAFFGNKEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60
Query: 61 VMFTVWDVGGQEKLRPLWRHYFNNTDGLVCFVS 93
V+FTVWDVGGQEKLRPLWRHYFNNTD L+ V
Sbjct: 61 VVFTVWDVGGQEKLRPLWRHYFNNTDALIYVVD 93
>Os02g0128600 Similar to ADP-ribosylation factor-like protein
Length = 194
Score = 163 bits (413), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 80/106 (75%), Positives = 91/106 (85%), Gaps = 5/106 (4%)
Query: 1 MGQAFRKLFDAFFGTSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60
MGQA R+LFDAFF T EMRVVMLGLDAAGKTTILY+LH+GEVLSTVPT+GFNVEKVQYKN
Sbjct: 1 MGQALRRLFDAFFSTREMRVVMLGLDAAGKTTILYRLHMGEVLSTVPTVGFNVEKVQYKN 60
Query: 61 VMFTVWDVGGQEKLRPLWRHYFNNTDGLVCFVSFVVIFLGIRERFV 106
V+FTVWDVGGQEKLRPLW+ Y +N+D L+ +VV L RER +
Sbjct: 61 VVFTVWDVGGQEKLRPLWKMYLSNSDALI----YVVDSLD-RERII 101
>Os06g0114200
Length = 189
Score = 152 bits (383), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 71/92 (77%), Positives = 81/92 (88%), Gaps = 1/92 (1%)
Query: 1 MGQAFRKLFDAFFGTSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60
MGQ+ RKLFD+F T EM+V+MLGLDAAGKTTILY+LHIGEVLS++PTIGFNVEKV+YKN
Sbjct: 1 MGQSLRKLFDSFC-TKEMKVLMLGLDAAGKTTILYRLHIGEVLSSIPTIGFNVEKVEYKN 59
Query: 61 VMFTVWDVGGQEKLRPLWRHYFNNTDGLVCFV 92
V FTVWDVGGQ+KLRPLWR YF N D L+ V
Sbjct: 60 VAFTVWDVGGQDKLRPLWRQYFRNADALIYVV 91
>AK062677
Length = 181
Score = 144 bits (364), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 63/93 (67%), Positives = 79/93 (84%)
Query: 1 MGQAFRKLFDAFFGTSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60
MG AF ++F+ FG EMR++M+GLDAAGKTTILYKL +GEV++T+PTIGFNVE V+YKN
Sbjct: 1 MGMAFSRVFERLFGKQEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKN 60
Query: 61 VMFTVWDVGGQEKLRPLWRHYFNNTDGLVCFVS 93
+ FTVWDVGGQ+K+RPLWRHY+ NT GL+ V
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVD 93
>Os01g0813400 Similar to ADP-ribosylation factor 1
Length = 181
Score = 144 bits (362), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 70/120 (58%), Positives = 86/120 (71%), Gaps = 11/120 (9%)
Query: 1 MGQAFRKLFDAFFGTSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60
MG F KLF F EMR++M+GLDAAGKTTILYKL +GE+++T+PTIGFNVE V+YKN
Sbjct: 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 VMFTVWDVGGQEKLRPLWRHYFNNTDGLVCFVSFVVIFLGIRERFV------HRCIKEGK 114
+ FTVWDVGGQ+K+RPLWRHYF NT GL+ V+ RER V HR + E +
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLI-----FVVDSNDRERVVEARDELHRMLNEDE 115
>Os05g0489600 Similar to ADP-ribosylation factor 1
Length = 181
Score = 144 bits (362), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 70/120 (58%), Positives = 86/120 (71%), Gaps = 11/120 (9%)
Query: 1 MGQAFRKLFDAFFGTSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60
MG F KLF F EMR++M+GLDAAGKTTILYKL +GE+++T+PTIGFNVE V+YKN
Sbjct: 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 VMFTVWDVGGQEKLRPLWRHYFNNTDGLVCFVSFVVIFLGIRERFV------HRCIKEGK 114
+ FTVWDVGGQ+K+RPLWRHYF NT GL+ V+ RER V HR + E +
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLI-----FVVDSNDRERVVEARDELHRMLNEDE 115
>Os07g0223400 Similar to ADP-ribosylation factor 1
Length = 181
Score = 143 bits (361), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 64/93 (68%), Positives = 77/93 (82%)
Query: 1 MGQAFRKLFDAFFGTSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60
MG AF KLF F EMR++M+GLDAAGKTTILYKL +GE+++T+PTIGFNVE V+YKN
Sbjct: 1 MGLAFGKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 VMFTVWDVGGQEKLRPLWRHYFNNTDGLVCFVS 93
+ FTVWDVGGQ+K+RPLWRHYF NT GL+ V
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93
>Os03g0811900 Similar to ADP-ribosylation factor
Length = 181
Score = 142 bits (359), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 69/120 (57%), Positives = 86/120 (71%), Gaps = 11/120 (9%)
Query: 1 MGQAFRKLFDAFFGTSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60
MG F KLF F EMR++M+GLDAAGKTTILYKL +GE+++T+PTIGFNVE V+YKN
Sbjct: 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 VMFTVWDVGGQEKLRPLWRHYFNNTDGLVCFVSFVVIFLGIRERFV------HRCIKEGK 114
+ FTVWDVGGQ+K+RPLWRHYF NT GL+ V+ R+R V HR + E +
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLI-----FVVDSNDRDRVVEARDELHRMLNEDE 115
>Os01g0265100 Similar to ADP-ribosylation factor
Length = 181
Score = 142 bits (358), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 69/120 (57%), Positives = 86/120 (71%), Gaps = 11/120 (9%)
Query: 1 MGQAFRKLFDAFFGTSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60
MG F KLF F EMR++M+GLDAAGKTTILYKL +GE+++T+PTIGFNVE V+YKN
Sbjct: 1 MGLTFTKLFSRLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 VMFTVWDVGGQEKLRPLWRHYFNNTDGLVCFVSFVVIFLGIRERFV------HRCIKEGK 114
+ FTVWDVGGQ+K+RPLWRHYF NT GL+ V+ R+R V HR + E +
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLI-----FVVDSNDRDRVVEARDELHRMLNEDE 115
>Os08g0248900 Similar to ADP-ribosylation factor 3
Length = 182
Score = 124 bits (310), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 55/92 (59%), Positives = 69/92 (75%)
Query: 1 MGQAFRKLFDAFFGTSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60
MG F +LF + FG E R+++LGLD AGKTTILY+L +GEV+ST+PTIGFNVE VQY N
Sbjct: 1 MGIVFTRLFSSVFGNREARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
Query: 61 VMFTVWDVGGQEKLRPLWRHYFNNTDGLVCFV 92
+ F VWD+GGQ +RP WR YF NT ++ V
Sbjct: 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVV 92
>Os11g0586900 Similar to ADP-ribosylation factor-like protein 5
Length = 184
Score = 96.7 bits (239), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 61/92 (66%)
Query: 1 MGQAFRKLFDAFFGTSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60
MG +++ F E ++V++GLD AGKTT LYKLH+GE ++ PTIG NVE+V +KN
Sbjct: 1 MGAWMSRVWFLMFPAKEYKIVVVGLDNAGKTTTLYKLHLGEAVTAAPTIGSNVEEVVFKN 60
Query: 61 VMFTVWDVGGQEKLRPLWRHYFNNTDGLVCFV 92
+ F VWD+GGQE LR W Y+ T ++ +
Sbjct: 61 IRFEVWDLGGQESLRTSWATYYRGTHAVIVVI 92
>Os02g0327100 Similar to ARL2 G-protein
Length = 185
Score = 83.2 bits (204), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 53/77 (68%)
Query: 17 EMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVMFTVWDVGGQEKLRP 76
EMR++M+GLD +GKTTI+ K++ + PT+GFN++ ++Y +WD+GGQ+ +R
Sbjct: 16 EMRILMVGLDNSGKTTIVLKINGEDTGVISPTLGFNIKTIKYHKYSLNIWDIGGQKTIRS 75
Query: 77 LWRHYFNNTDGLVCFVS 93
WR+YF TDGLV V
Sbjct: 76 YWRNYFEQTDGLVWVVD 92
>Os03g0392300 Similar to GTP-binding protein-like
Length = 203
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 7/93 (7%)
Query: 8 LFDAFFGTSEMRVVMLGLDAAGKTTILYKLHI----GEVLST---VPTIGFNVEKVQYKN 60
L+ F +E V++LG+D AGKTT+L K+ GE L+ VPT+G N+ +++ N
Sbjct: 8 LWKYIFNKTEFHVLILGVDKAGKTTLLEKIKSIYLKGEGLTPDRIVPTVGLNIGRIEDAN 67
Query: 61 VMFTVWDVGGQEKLRPLWRHYFNNTDGLVCFVS 93
WD+GGQ LR +W Y+ ++ +
Sbjct: 68 AKLVFWDLGGQVGLRTIWEKYYQEAHAIIYVID 100
>Os03g0200800 ADP-ribosylation factor family protein
Length = 184
Score = 62.4 bits (150), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 3 QAFRKLFDAFFGTSEMRVVMLGLDAAGKTTILYKLHIGE-VLSTVPTIGFNVEKVQYKNV 61
+AF + F EM + ++GL AGKT+++ + G +PT+GFN+ KV NV
Sbjct: 5 EAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGFSEDMIPTVGFNMRKVTKGNV 64
Query: 62 MFTVWDVGGQEKLRPLWRHYFNNTDGLVCFV 92
+WD+GGQ + R +W Y +V V
Sbjct: 65 TIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.331 0.146 0.467
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,079,001
Number of extensions: 149837
Number of successful extensions: 481
Number of sequences better than 1.0e-10: 15
Number of HSP's gapped: 478
Number of HSP's successfully gapped: 15
Length of query: 124
Length of database: 17,035,801
Length adjustment: 88
Effective length of query: 36
Effective length of database: 12,440,969
Effective search space: 447874884
Effective search space used: 447874884
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 149 (62.0 bits)