Os02g0128600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to ADP-ribosylation factor-like protein.
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Os02g0128600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to ADP-ribosylation factor-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 15.15 | 0.183 | 11.6 | -0.535 | 0.0307 | -0.361 | 0.0991 | 4.62 | 0.0493 | 1.21 | 29.7 | 4798 | -- | -- |
| 18.11 | 0.2 | 11.5 | 0.338 | 0.0638 | -0.144 | 0.0744 | -- | 0.136 | 0.142 | 21.1 | 47520 | -- | -- |
| 15.09 | 0.181 | 11.6 | -0.565 | 0.0325 | -0.354 | -- | 4.57 | 0.0342 | 0.396 | 29.6 | 4789 | -- | -- |
| 17.63 | 0.196 | 11.4 | 0.373 | 0.00862 | 0.184 | -- | -- | 0.26 | 22.1 | 32.8 | 11782 | -- | -- |
| 15.14 | 0.181 | 11.6 | -0.558 | -- | -0.354 | -- | 4.55 | 0.0327 | -- | 29.6 | 4789 | -- | -- |
| 19.12 | 0.205 | 11.5 | 0.371 | 0.0148 | -- | -0.121 | -- | 0.169 | 17.7 | -- | -- | -- | -- |
| 19.12 | 0.205 | 11.5 | 0.371 | 0.0261 | -- | -- | -- | 0.169 | 21.5 | -- | -- | -- | -- |
| 17.14 | 0.193 | 11.4 | 0.489 | -- | 0.223 | -- | -- | 0.303 | -- | 32.3 | 17348 | -- | -- |
| 22.22 | 0.22 | 11.5 | -- | 0.0292 | 0.145 | -- | -- | 0.193 | 20.6 | 33.1 | 17684 | -- | -- |
| 19.16 | 0.205 | 11.5 | 0.371 | -- | -- | -- | -- | 0.169 | -- | -- | -- | -- | -- |
| 22.76 | 0.223 | 11.5 | -- | 0.0275 | -- | -- | -- | 0.127 | 22.5 | -- | -- | -- | -- |
| 20.62 | 0.211 | 11.5 | -- | -- | -0.193 | -- | -- | 0.143 | -- | 35.1 | 47520 | -- | -- |
| 22.8 | 0.223 | 11.5 | -- | -- | -- | -- | -- | 0.127 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 14.81 | radiation | 10.0 | 14400 | > th | dose independent | rect. | 17 | 14 |
| 2 | 14.92 | wind | 1.0 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 3 | 14.96 | wind | 1.0 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 4 | 14.96 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 10 |
| 5 | 14.96 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 10 |
| 6 | 14.97 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 10 |
| 8 | 15.08 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 5 | 2 |
| 11 | 15.12 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 10 |
| 13 | 15.13 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 15 | 2 |
| 14 | 15.14 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 15 | 19 |
| 17 | 15.16 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 18 | 15.16 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 6 |
| 19 | 15.18 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 6 |
| 23 | 15.19 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 6 |
| 24 | 15.19 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 6 |
| 27 | 15.20 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 3 | 6 |
| 32 | 15.22 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 36 | 15.22 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 41 | 15.23 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 43 | 15.23 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 2 |
| 46 | 15.24 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 47 | 15.24 | wind | 1.0 | 43200 | > th | dose independent | rect. | 3 | 5 |
| 49 | 15.24 | wind | 1.0 | 43200 | < th | dose independent | rect. | 4 | 5 |
| 55 | 15.26 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 15 | 6 |
| 66 | 15.26 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 72 | 15.27 | humidity | 50.0 | 14400 | > th | dose independent | sin | 11 | NA |
| 73 | 15.27 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 15 | 4 |
| 78 | 15.27 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 83 | 15.28 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 87 | 15.29 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 11 | 3 |
| 99 | 15.31 | radiation | 10.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 137 | 15.35 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 149 | 15.36 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 6 | 6 |
| 169 | 15.37 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 17 | 21 |
| 171 | 15.37 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 12 | 1 |
| 177 | 15.38 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 13 | 2 |
| 178 | 15.38 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 11 | 2 |
| 183 | 15.38 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 191 | 15.39 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 6 | 6 |
| 195 | 15.39 | temperature | 20.0 | 14400 | > th | dose dependent | sin | 3 | NA |
| 219 | 15.40 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 6 | 16 |
| 222 | 15.40 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 17 | 18 |
| 226 | 15.41 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 11 | 5 |
| 250 | 15.41 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 16 | 17 |
| 257 | 15.41 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 18 | 20 |
| 267 | 15.42 | humidity | 60.0 | 14400 | < th | dose dependent | sin | 12 | NA |
| 302 | 15.43 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 17 | 21 |
| 359 | 15.44 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 401 | 15.45 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 16 | 4 |
| 407 | 15.45 | temperature | 20.0 | 14400 | > th | dose dependent | no | NA | NA |
| 413 | 15.45 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 16 | 4 |
| 438 | 15.45 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 13 | 22 |
| 456 | 15.46 | temperature | 25.0 | 4320 | > th | dose dependent | sin | 9 | NA |
| 459 | 15.46 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 10 | 1 |
| 491 | 15.46 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 10 | 23 |
| 512 | 15.47 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 11 |
| 529 | 15.48 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 16 | 4 |
| 554 | 15.49 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 15 | 2 |
| 566 | 15.49 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 14 | 6 |
| 582 | 15.50 | wind | 7.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 583 | 15.50 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 13 | 2 |
| 620 | 15.51 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 8 | 6 |
| 623 | 15.51 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 8 | 8 |
| 631 | 15.51 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 19 | 14 |
| 668 | 15.52 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 7 | 2 |
| 704 | 15.52 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 10 | 3 |
| 711 | 15.52 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 13 | 9 |
| 728 | 15.53 | wind | 7.0 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 810 | 15.55 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 12 | 4 |
| 847 | 15.55 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 17 | 21 |
| 849 | 15.56 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 7 | 2 |
| 882 | 15.57 | humidity | 50.0 | 14400 | < th | dose independent | sin | 11 | NA |
| 898 | 15.57 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 16 | 4 |
| 918 | 15.58 | temperature | 25.0 | 14400 | < th | dose independent | sin | 4 | NA |
| 969 | 15.59 | temperature | 25.0 | 14400 | > th | dose independent | sin | 4 | NA |
| 971 | 15.59 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 982 | 15.59 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 1 |