Os01g0813400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to ADP-ribosylation factor 1.
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Os01g0813400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to ADP-ribosylation factor 1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.36 | 0.222 | 15.4 | -0.047 | 0.163 | -0.465 | -0.369 | -0.925 | 0.0657 | 15.4 | 24.55 | 1392 | -- | -- |
| 23.54 | 0.226 | 15.4 | 0.198 | 0.196 | -0.551 | -0.107 | -- | 0.085 | 17 | 25.54 | 2506 | -- | -- |
| 22.68 | 0.222 | 15.4 | -0.0427 | 0.172 | -0.461 | -- | -0.875 | 0.0646 | 16.3 | 24.55 | 1410 | -- | -- |
| 22.99 | 0.223 | 15.4 | 0.205 | 0.226 | -0.564 | -- | -- | 0.122 | 16.3 | 24.94 | 1570 | -- | -- |
| 23.94 | 0.228 | 15.4 | 0.0615 | -- | -0.548 | -- | -0.505 | 0.105 | -- | 24 | 1258 | -- | -- |
| 34.78 | 0.276 | 15.4 | 0.0193 | 0.228 | -- | -0.22 | -- | 0.0537 | 15.6 | -- | -- | -- | -- |
| 34.91 | 0.277 | 15.4 | 0.0156 | 0.23 | -- | -- | -- | 0.0525 | 15.9 | -- | -- | -- | -- |
| 24.1 | 0.229 | 15.4 | 0.208 | -- | -0.618 | -- | -- | 0.14 | -- | 24.2 | 1256 | -- | -- |
| 24.01 | 0.228 | 15.4 | -- | 0.226 | -0.52 | -- | -- | 0.0844 | 16.2 | 25.36 | 1579 | -- | -- |
| 37.81 | 0.287 | 15.4 | 0.00614 | -- | -- | -- | -- | 0.0463 | -- | -- | -- | -- | -- |
| 34.92 | 0.276 | 15.4 | -- | 0.229 | -- | -- | -- | 0.0507 | 15.9 | -- | -- | -- | -- |
| 25.15 | 0.234 | 15.4 | -- | -- | -0.571 | -- | -- | 0.108 | -- | 24.36 | 1243 | -- | -- |
| 37.81 | 0.287 | 15.4 | -- | -- | -- | -- | -- | 0.0457 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.49 | temperature | 25 | 14400 | > th | dose dependent | rect. | 19 | 3 |
| 4 | 21.52 | temperature | 25 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 47 | 21.98 | temperature | 20 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 51 | 22.00 | temperature | 30 | 14400 | > th | dose dependent | rect. | 16 | 19 |
| 56 | 22.03 | temperature | 30 | 14400 | > th | dose dependent | sin | 11 | NA |
| 57 | 22.05 | temperature | 25 | 14400 | > th | dose independent | rect. | 22 | 1 |
| 72 | 22.09 | temperature | 30 | 14400 | < th | dose independent | rect. | 16 | 19 |
| 77 | 22.10 | temperature | 30 | 14400 | < th | dose independent | sin | 11 | NA |
| 78 | 22.10 | temperature | 30 | 14400 | < th | dose independent | rect. | 17 | 16 |
| 82 | 22.11 | temperature | 25 | 14400 | < th | dose independent | rect. | 20 | 4 |
| 88 | 22.12 | temperature | 20 | 43200 | > th | dose independent | rect. | 17 | 5 |
| 89 | 22.12 | temperature | 30 | 14400 | > th | dose independent | rect. | 17 | 17 |
| 90 | 22.12 | temperature | 30 | 14400 | > th | dose independent | rect. | 16 | 19 |
| 93 | 22.13 | temperature | 30 | 14400 | > th | dose independent | sin | 11 | NA |
| 106 | 22.14 | temperature | 20 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 115 | 22.14 | temperature | 30 | 14400 | > th | dose dependent | no | NA | NA |
| 117 | 22.14 | temperature | 30 | 14400 | > th | dose dependent | rect. | 10 | 9 |
| 248 | 22.15 | temperature | 30 | 14400 | > th | dose dependent | rect. | 12 | 7 |
| 413 | 22.20 | temperature | 30 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 421 | 22.21 | temperature | 30 | 14400 | < th | dose independent | rect. | 17 | 8 |
| 447 | 22.22 | temperature | 30 | 14400 | < th | dose independent | rect. | 17 | 6 |
| 489 | 22.23 | temperature | 30 | 14400 | < th | dose independent | rect. | 17 | 2 |
| 556 | 22.26 | temperature | 30 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 590 | 22.26 | temperature | 25 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 655 | 22.30 | temperature | 20 | 43200 | > th | dose independent | sin | 17 | NA |
| 681 | 22.31 | temperature | 25 | 1440 | > th | dose dependent | rect. | 9 | 20 |
| 741 | 22.35 | temperature | 30 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 757 | 22.35 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 21 |
| 769 | 22.36 | temperature | 30 | 14400 | < th | dose independent | rect. | 7 | 17 |
| 796 | 22.37 | temperature | 30 | 14400 | > th | dose independent | sin | 7 | NA |
| 799 | 22.37 | temperature | 30 | 14400 | > th | dose independent | sin | 5 | NA |
| 801 | 22.37 | temperature | 30 | 14400 | > th | dose independent | no | NA | NA |
| 803 | 22.37 | temperature | 30 | 14400 | < th | dose independent | no | NA | NA |
| 804 | 22.37 | temperature | 25 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 808 | 22.37 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 11 |
| 810 | 22.37 | temperature | 30 | 14400 | < th | dose independent | rect. | 8 | 11 |
| 988 | 22.37 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 19 |
| 997 | 22.38 | temperature | 30 | 14400 | > th | dose independent | sin | 3 | NA |