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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0265100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to ADP-ribosylation factor.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.64 (0.0694) R2 : 0.546
β1 : -4.78 (0.254) R2dD : 0.368 R2D : 0.218
β2 : 0.765 (0.177) R2dC : 0.0189 R2C : -0.0228
β3 : 2.53 (0.197) R2dE : 0.167 R2E : 0.0754
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.7 (0.149) R2dN8 : 0.176 R2N8 : 0.0226
σ : 1.29
deviance : 771.93
__
_____
C
peak time of C : 7.88
E
wheather : humidity
threshold : 71.99
memory length : 1116
response mode : < th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 8.8
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
763.06 1.3 6.63 -4.61 0.735 2.37 1.63 1.42 -1.64 6.99 71.71 1120 8.62 --
766.61 1.29 6.64 -4.8 0.72 2.4 1.92 -- -1.67 6.58 71.84 1123 8.59 --
768.71 1.29 6.64 -4.61 0.771 2.46 -- 1.34 -1.67 7.72 72 1119 8.83 --
771.93 1.29 6.64 -4.78 0.765 2.53 -- -- -1.7 7.88 71.99 1116 8.8 --
795.03 1.31 6.63 -4.55 -- 2.5 -- 1.44 -1.61 -- 71 1126 7.87 --
984.69 1.47 6.6 -4.55 1.21 -- 2.71 -- -1.51 4.67 -- -- -- --
1004.03 1.48 6.61 -4.57 1.23 -- -- -- -1.52 4.75 -- -- -- --
798.67 1.32 6.65 -4.74 -- 2.59 -- -- -1.64 -- 72 1126 7.86 --
1353.92 1.71 6.5 -- 0.792 2.3 -- -- -1.13 8.47 75 1076 8.79 --
1083.92 1.54 6.62 -4.52 -- -- -- -- -1.49 -- -- -- -- --
1553.58 1.84 6.5 -- 1.15 -- -- -- -1.02 4.86 -- -- -- --
1380.83 1.73 6.52 -- -- 2.31 -- -- -1.05 -- 74 1115 8.12 --
1622.83 1.88 6.51 -- -- -- -- -- -0.99 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 764.86 humidity 70 14400 < th dose independent rect. 18 14
3 767.77 humidity 70 14400 < th dose independent rect. 18 4
13 769.40 humidity 70 14400 > th dose independent rect. 19 13
17 779.44 humidity 70 14400 < th dose dependent rect. 17 14
19 779.87 humidity 70 14400 < th dose dependent rect. 18 1
20 779.97 humidity 70 14400 < th dose dependent rect. 17 5
32 780.87 humidity 70 14400 > th dose independent rect. 19 10
35 781.20 humidity 70 14400 > th dose independent rect. 19 6
59 788.87 humidity 80 1440 < th dose dependent rect. 16 6
60 788.90 humidity 80 1440 < th dose dependent rect. 16 16
105 791.64 radiation 20 14400 > th dose dependent rect. 16 15
124 793.08 radiation 10 1440 < th dose dependent rect. 18 10
126 793.26 humidity 60 14400 < th dose independent rect. 16 16
128 793.76 humidity 60 14400 < th dose independent rect. 16 6
142 794.99 temperature 30 720 > th dose dependent rect. 18 1
158 795.42 humidity 80 1440 < th dose dependent sin 13 NA
175 795.97 humidity 80 1440 < th dose dependent rect. 16 1
177 796.23 temperature 25 1440 > th dose dependent rect. 15 2
218 797.49 radiation 30 14400 < th dose independent rect. 16 12
224 797.74 humidity 50 1440 > th dose dependent rect. 11 22
233 798.18 humidity 50 1440 > th dose dependent rect. 14 19
235 798.42 humidity 50 1440 > th dose dependent rect. 15 22
241 798.71 radiation 20 14400 > th dose dependent rect. 16 2
255 798.77 humidity 50 1440 > th dose dependent rect. 2 21
265 799.04 radiation 30 14400 < th dose independent rect. 16 2
298 799.68 radiation 30 14400 < th dose independent rect. 16 9
318 800.37 temperature 25 1440 > th dose dependent rect. 13 10
319 800.37 temperature 25 1440 > th dose dependent rect. 11 12
329 800.55 humidity 50 1440 > th dose dependent no NA NA
337 800.69 wind 7 43200 > th dose independent rect. 24 14
344 800.84 temperature 25 1440 > th dose dependent rect. 11 6
358 800.91 humidity 50 1440 > th dose dependent rect. 6 23
374 801.22 radiation 10 1440 < th dose dependent rect. 18 7
376 801.28 temperature 25 1440 > th dose dependent rect. 13 20
382 801.35 temperature 25 1440 > th dose dependent sin 19 NA
401 801.59 humidity 50 1440 > th dose dependent rect. 20 23
407 801.74 wind 7 43200 < th dose independent rect. 24 14
409 801.75 humidity 70 720 > th dose independent rect. 19 8
414 801.80 wind 7 43200 > th dose independent sin 5 NA
422 801.94 wind 7 43200 > th dose independent rect. 19 19
431 802.07 wind 7 43200 < th dose independent sin 4 NA
453 802.31 wind 7 43200 > th dose independent rect. 21 19
454 802.32 wind 3 43200 > th dose dependent rect. 11 2
463 802.41 wind 7 43200 < th dose independent rect. 21 19
482 802.71 temperature 25 1440 > th dose dependent rect. 6 17
489 802.82 radiation 10 1440 < th dose dependent rect. 18 1
502 802.93 humidity 70 1440 < th dose independent sin 13 NA
510 802.99 radiation 10 1440 > th dose independent rect. 15 16
511 802.99 wind 7 43200 < th dose independent rect. 19 19
525 803.07 wind 7 43200 < th dose independent rect. 19 21
527 803.12 wind 7 43200 < th dose independent rect. 17 21
556 803.35 humidity 50 1440 > th dose dependent sin 16 NA
565 803.41 temperature 25 1440 > th dose dependent rect. 6 13
613 803.82 wind 7 43200 > th dose independent rect. 6 8
619 803.85 wind 5 43200 > th dose dependent rect. 9 5
653 804.08 humidity 70 1440 < th dose independent rect. 15 16
657 804.10 humidity 50 1440 > th dose dependent rect. 15 8
668 804.18 humidity 70 1440 < th dose independent rect. 15 5
697 804.28 wind 7 43200 < th dose independent rect. 6 8
709 804.33 wind 5 43200 > th dose dependent rect. 24 16
725 804.43 wind 7 43200 > th dose independent rect. 8 5
772 804.67 temperature 25 1440 > th dose dependent rect. 20 23
799 804.90 temperature 25 1440 > th dose dependent no NA NA
816 805.02 wind 3 43200 < th dose independent rect. 2 2
867 805.36 radiation 20 4320 < th dose independent rect. 7 1
886 805.47 humidity 50 1440 > th dose dependent rect. 15 12
932 805.80 humidity 50 1440 < th dose independent rect. 16 1
958 806.02 wind 5 43200 > th dose dependent sin 3 NA
980 806.26 radiation 30 14400 < th dose independent rect. 15 17
983 806.28 wind 9 43200 < th dose dependent rect. 11 2