Os08g0248900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to ADP-ribosylation factor 3.
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Os08g0248900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to ADP-ribosylation factor 3.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26.04 | 0.24 | 12.2 | 0.438 | 1.23 | 0.651 | -0.492 | -1.11 | 0.575 | 16.1 | 93.07 | 200 | -- | -- |
| 26.95 | 0.242 | 12.2 | 0.427 | 1.24 | 0.673 | -0.175 | -- | 0.562 | 16.1 | 93.42 | 203 | -- | -- |
| 26.47 | 0.24 | 12.2 | 0.439 | 1.24 | 0.747 | -- | -0.775 | 0.57 | 16.1 | 93.54 | 199 | -- | -- |
| 27 | 0.242 | 12.2 | 0.427 | 1.24 | 0.724 | -- | -- | 0.567 | 16.1 | 93.54 | 199 | -- | -- |
| 87.63 | 0.438 | 12.3 | 0.478 | -- | -0.504 | -- | -0.296 | 0.417 | -- | 93.08 | 991 | -- | -- |
| 31.62 | 0.264 | 12.3 | 0.472 | 1.07 | -- | -0.377 | -- | 0.502 | 15.9 | -- | -- | -- | -- |
| 32.03 | 0.265 | 12.3 | 0.467 | 1.06 | -- | -- | -- | 0.5 | 16 | -- | -- | -- | -- |
| 78.92 | 0.416 | 12.3 | 0.506 | -- | -0.539 | -- | -- | 0.367 | -- | 85.16 | 1111 | -- | -- |
| 31.71 | 0.262 | 12.2 | -- | 1.25 | 0.729 | -- | -- | 0.53 | 16.1 | 93.17 | 199 | -- | -- |
| 93.9 | 0.453 | 12.3 | 0.423 | -- | -- | -- | -- | 0.472 | -- | -- | -- | -- | -- |
| 37.78 | 0.288 | 12.3 | -- | 1.05 | -- | -- | -- | 0.448 | 16 | -- | -- | -- | -- |
| 85.43 | 0.432 | 12.3 | -- | -- | -0.501 | -- | -- | 0.319 | -- | 85 | 1119 | -- | -- |
| 98.63 | 0.464 | 12.3 | -- | -- | -- | -- | -- | 0.425 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.67 | humidity | 90.0 | 10 | < th | dose independent | rect. | 4 | 10 |
| 3 | 24.77 | radiation | 1.0 | 90 | < th | dose dependent | sin | 16 | NA |
| 6 | 24.98 | radiation | 1.0 | 270 | > th | dose independent | rect. | 11 | 7 |
| 8 | 25.06 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 24 | 12 |
| 10 | 25.06 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 24 | 15 |
| 13 | 25.09 | radiation | 30.0 | 270 | < th | dose dependent | sin | 16 | NA |
| 34 | 25.25 | radiation | 10.0 | 270 | > th | dose independent | rect. | 12 | 5 |
| 52 | 25.32 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 24 | 8 |
| 53 | 25.33 | radiation | 1.0 | 90 | < th | dose independent | sin | 16 | NA |
| 103 | 25.51 | radiation | 1.0 | 270 | > th | dose independent | sin | 19 | NA |
| 104 | 25.51 | radiation | 1.0 | 270 | < th | dose independent | rect. | 14 | 8 |
| 117 | 25.54 | radiation | 1.0 | 270 | < th | dose independent | sin | 19 | NA |
| 119 | 25.55 | radiation | 10.0 | 270 | > th | dose independent | sin | 16 | NA |
| 126 | 25.58 | radiation | 20.0 | 270 | < th | dose independent | sin | 15 | NA |
| 140 | 25.59 | wind | 1.0 | 30 | > th | dose independent | rect. | 19 | 19 |
| 156 | 25.61 | humidity | 80.0 | 270 | < th | dose independent | rect. | 12 | 5 |
| 173 | 25.62 | wind | 9.0 | 30 | < th | dose independent | rect. | 14 | 5 |
| 174 | 25.62 | temperature | 20.0 | 30 | > th | dose independent | rect. | 14 | 5 |
| 175 | 25.62 | wind | 3.0 | 90 | > th | dose independent | rect. | 12 | 7 |
| 176 | 25.62 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 15 | 7 |
| 179 | 25.63 | wind | 9.0 | 30 | < th | dose independent | rect. | 19 | 19 |
| 191 | 25.65 | wind | 1.0 | 30 | > th | dose independent | rect. | 14 | 5 |
| 205 | 25.65 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 14 | 2 |
| 213 | 25.67 | radiation | 40.0 | 30 | < th | dose independent | rect. | 14 | 5 |
| 216 | 25.67 | temperature | 25.0 | 90 | < th | dose independent | rect. | 24 | 9 |
| 223 | 25.68 | temperature | 10.0 | 30 | > th | dose independent | rect. | 14 | 5 |
| 225 | 25.68 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 14 | 5 |
| 227 | 25.68 | temperature | 10.0 | 30 | > th | dose independent | rect. | 19 | 19 |
| 228 | 25.68 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 19 | 19 |
| 232 | 25.69 | wind | 1.0 | 90 | > th | dose dependent | rect. | 13 | 6 |
| 237 | 25.70 | humidity | 90.0 | 90 | > th | dose dependent | sin | 5 | NA |
| 242 | 25.71 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 14 | 5 |
| 243 | 25.71 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 14 | 5 |
| 265 | 25.77 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 13 | 4 |
| 266 | 25.77 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 14 | 5 |
| 276 | 25.80 | radiation | 1.0 | 270 | > th | dose dependent | sin | 15 | NA |
| 314 | 25.84 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 14 | 5 |
| 316 | 25.84 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 12 | 18 |
| 318 | 25.85 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 12 | 6 |
| 346 | 25.88 | radiation | 40.0 | 30 | < th | dose independent | rect. | 12 | 7 |
| 368 | 25.91 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 15 | 5 |
| 373 | 25.91 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 20 | 19 |
| 381 | 25.93 | humidity | 90.0 | 90 | > th | dose independent | rect. | 24 | 11 |
| 393 | 25.95 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 14 | 5 |
| 403 | 25.95 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 12 | 7 |
| 414 | 25.97 | humidity | 50.0 | 270 | > th | dose independent | rect. | 17 | 18 |
| 438 | 26.01 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 12 | 5 |
| 470 | 26.03 | wind | 9.0 | 270 | < th | dose independent | rect. | 17 | 19 |
| 490 | 26.04 | wind | 1.0 | 30 | > th | dose independent | rect. | 19 | 10 |
| 502 | 26.04 | temperature | 10.0 | 270 | > th | dose independent | rect. | 17 | 19 |
| 506 | 26.05 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 12 | 5 |
| 528 | 26.06 | humidity | 90.0 | 90 | > th | dose independent | rect. | 24 | 8 |
| 633 | 26.13 | wind | 1.0 | 270 | > th | dose dependent | rect. | 13 | 3 |
| 642 | 26.15 | humidity | 80.0 | 270 | < th | dose independent | rect. | 14 | 1 |
| 643 | 26.15 | humidity | 50.0 | 30 | > th | dose independent | rect. | 14 | 5 |
| 650 | 26.16 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 13 | 7 |
| 655 | 26.16 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 20 | 17 |
| 658 | 26.16 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 20 | 17 |
| 710 | 26.20 | wind | 7.0 | 270 | < th | dose independent | rect. | 14 | 1 |
| 734 | 26.21 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 19 | 19 |
| 739 | 26.21 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 19 | 19 |
| 822 | 26.28 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 14 | 1 |
| 845 | 26.29 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 17 | 19 |
| 851 | 26.29 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 17 | 19 |
| 852 | 26.30 | temperature | 20.0 | 270 | > th | dose independent | rect. | 14 | 1 |
| 863 | 26.31 | temperature | 20.0 | 270 | > th | dose independent | rect. | 13 | 3 |
| 865 | 26.31 | wind | 1.0 | 30 | > th | dose independent | rect. | 4 | 10 |
| 882 | 26.33 | humidity | 50.0 | 270 | > th | dose independent | rect. | 14 | 1 |
| 893 | 26.33 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 13 | 3 |
| 903 | 26.34 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 14 | 1 |
| 909 | 26.34 | radiation | 20.0 | 270 | < th | dose independent | rect. | 15 | 10 |
| 913 | 26.34 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 14 | 1 |
| 931 | 26.35 | wind | 9.0 | 270 | < th | dose independent | rect. | 13 | 3 |
| 933 | 26.35 | temperature | 10.0 | 30 | > th | dose independent | rect. | 19 | 6 |
| 934 | 26.35 | temperature | 30.0 | 30 | < th | dose independent | rect. | 19 | 6 |
| 935 | 26.35 | humidity | 50.0 | 30 | > th | dose independent | rect. | 19 | 6 |
| 937 | 26.35 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 19 | 6 |
| 938 | 26.35 | radiation | 1.0 | 30 | < th | dose independent | rect. | 19 | 6 |
| 955 | 26.35 | temperature | 10.0 | 30 | > th | dose independent | rect. | 1 | 18 |
| 957 | 26.35 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 1 | 18 |
| 958 | 26.35 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 19 | 6 |
| 968 | 26.36 | wind | 9.0 | 30 | < th | dose independent | rect. | 19 | 6 |
| 978 | 26.37 | temperature | 10.0 | 270 | > th | dose independent | rect. | 14 | 1 |
| 980 | 26.37 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 14 | 1 |
| 989 | 26.37 | temperature | 10.0 | 270 | > th | dose independent | rect. | 15 | 23 |
| 994 | 26.38 | temperature | 10.0 | 270 | > th | dose independent | rect. | 13 | 3 |
| 996 | 26.38 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 13 | 3 |