Os03g0392300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to GTP-binding protein-like.
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Os03g0392300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to GTP-binding protein-like.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 11.84 | 0.162 | 11.8 | -0.604 | 0.33 | -0.44 | 0.0425 | 0.0941 | 0.236 | 22.7 | 18.4 | 6458 | -- | -- |
| 11.85 | 0.16 | 11.8 | -0.599 | 0.328 | -0.467 | 0.0394 | -- | 0.238 | 22.6 | 18.4 | 6459 | -- | -- |
| 11.85 | 0.16 | 11.8 | -0.605 | 0.33 | -0.439 | -- | 0.093 | 0.236 | 22.7 | 18.44 | 6412 | -- | -- |
| 11.86 | 0.16 | 11.8 | -0.603 | 0.33 | -0.47 | -- | -- | 0.237 | 22.6 | 18.4 | 6412 | -- | -- |
| 18.48 | 0.2 | 11.8 | -0.613 | -- | -0.458 | -- | 0.0985 | 0.224 | -- | 18.6 | 6703 | -- | -- |
| 14.41 | 0.178 | 11.8 | -0.32 | 0.336 | -- | 0.0356 | -- | 0.337 | 22.7 | -- | -- | -- | -- |
| 14.42 | 0.178 | 11.8 | -0.322 | 0.336 | -- | -- | -- | 0.337 | 22.7 | -- | -- | -- | -- |
| 18.47 | 0.2 | 11.8 | -0.62 | -- | -0.519 | -- | -- | 0.231 | -- | 18.3 | 6688 | -- | -- |
| 16.65 | 0.19 | 11.8 | -- | 0.339 | -0.113 | -- | -- | 0.344 | 22.3 | 22.4 | 1499 | -- | -- |
| 21.39 | 0.216 | 11.8 | -0.315 | -- | -- | -- | -- | 0.339 | -- | -- | -- | -- | -- |
| 17.15 | 0.194 | 11.8 | -- | 0.334 | -- | -- | -- | 0.373 | 22.6 | -- | -- | -- | -- |
| 22.4 | 0.22 | 11.8 | -- | -- | -0.182 | -- | -- | 0.336 | -- | 22.2 | 856 | -- | -- |
| 24.01 | 0.229 | 11.7 | -- | -- | -- | -- | -- | 0.374 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 11.58 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 2 | 11.59 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 4 | 11.60 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 6 | 11.62 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 7 | 11.62 | wind | 1.0 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 8 | 11.62 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 9 | 11.63 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 11 | 11.64 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 15 | 11.65 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 18 | 11.65 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 6 | 2 |
| 24 | 11.67 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 29 | 11.68 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 6 | 2 |
| 30 | 11.68 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 20 | 3 |
| 35 | 11.68 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 6 | 2 |
| 36 | 11.69 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 37 | 11.69 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 38 | 11.69 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 40 | 11.69 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 45 | 11.69 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 6 | 2 |
| 47 | 11.70 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 49 | 11.70 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 55 | 11.70 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 7 | 6 |
| 59 | 11.71 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 13 | 2 |
| 65 | 11.71 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 8 | 7 |
| 67 | 11.71 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 7 | 8 |
| 82 | 11.71 | radiation | 30.0 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 83 | 11.71 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 13 | 20 |
| 106 | 11.71 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 16 | 21 |
| 107 | 11.72 | wind | 7.0 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 194 | 11.73 | humidity | 50.0 | 43200 | > th | dose independent | sin | 22 | NA |
| 200 | 11.73 | humidity | 50.0 | 43200 | < th | dose independent | sin | 23 | NA |
| 205 | 11.73 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 206 | 11.73 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 207 | 11.73 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 246 | 11.73 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 17 | 13 |
| 352 | 11.74 | humidity | 50.0 | 43200 | > th | dose independent | sin | 20 | NA |
| 355 | 11.74 | humidity | 50.0 | 43200 | > th | dose independent | no | NA | NA |
| 356 | 11.74 | humidity | 50.0 | 43200 | < th | dose independent | sin | 21 | NA |
| 361 | 11.74 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 362 | 11.74 | radiation | 10.0 | 4320 | < th | dose independent | rect. | 5 | 1 |
| 363 | 11.74 | radiation | 30.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 386 | 11.74 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 13 | 8 |
| 502 | 11.74 | humidity | 60.0 | 43200 | < th | dose dependent | sin | 4 | NA |
| 503 | 11.74 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 525 | 11.75 | humidity | 50.0 | 43200 | > th | dose independent | sin | 18 | NA |
| 529 | 11.75 | humidity | 50.0 | 43200 | < th | dose independent | no | NA | NA |
| 530 | 11.75 | wind | 1.0 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 534 | 11.75 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 12 | 2 |
| 548 | 11.75 | radiation | 10.0 | 4320 | < th | dose independent | rect. | 24 | 6 |
| 662 | 11.75 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 11 | 22 |
| 680 | 11.75 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 16 | 23 |
| 687 | 11.75 | humidity | 50.0 | 43200 | < th | dose dependent | sin | 2 | NA |
| 721 | 11.76 | humidity | 50.0 | 43200 | > th | dose independent | sin | 16 | NA |
| 725 | 11.76 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 794 | 11.76 | humidity | 50.0 | 43200 | < th | dose dependent | sin | 0 | NA |
| 811 | 11.76 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 7 | 6 |
| 885 | 11.77 | wind | 7.0 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 887 | 11.77 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 900 | 11.77 | radiation | 10.0 | 4320 | < th | dose independent | rect. | 2 | 4 |
| 905 | 11.77 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 24 | 6 |
| 908 | 11.77 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 3 | 7 |
| 911 | 11.77 | radiation | 30.0 | 43200 | < th | dose independent | rect. | 24 | 7 |
| 923 | 11.77 | radiation | 10.0 | 4320 | < th | dose independent | rect. | 18 | 12 |
| 949 | 11.77 | humidity | 50.0 | 43200 | < th | dose dependent | sin | 22 | NA |
| 952 | 11.77 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 955 | 11.77 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 13 | 1 |