FiT-DB / Search/ Help/ Sample detail

Os05g0489600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to ADP-ribosylation factor 1.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 15.4 (0.0131) R2 : 0.713
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.937 (0.0339) R2dC : 0.483 R2C : 0.437
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.507 (0.0275) R2dN8 : 0.276 R2N8 : 0.23
σ : 0.247
deviance : 27.81
__
_____
C
peak time of C : 4.66
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
18.43 0.202 15.4 0.119 0.902 -0.391 -0.013 0.648 0.409 4.75 27.6 2763 -- --
18.53 0.2 15.4 0.23 0.919 -0.497 -0.0409 -- 0.435 4.7 23.76 3142 -- --
18.43 0.2 15.4 0.118 0.903 -0.391 -- 0.652 0.41 4.75 27.6 2780 -- --
18.54 0.201 15.4 0.23 0.919 -0.498 -- -- 0.435 4.69 23.74 3141 -- --
60.75 0.363 15.4 0.128 -- -0.578 -- 0.448 0.398 -- 26.65 2660 -- --
22.33 0.222 15.3 0.455 0.929 -- -0.0763 -- 0.557 4.68 -- -- -- --
22.34 0.221 15.3 0.455 0.928 -- -- -- 0.558 4.67 -- -- -- --
60.9 0.363 15.4 0.225 -- -0.633 -- -- 0.416 -- 26.3 2675 -- --
18.59 0.201 15.4 -- 0.938 -0.533 -- -- 0.4 4.72 19.4 28814 -- --
68.12 0.386 15.4 0.491 -- -- -- -- 0.582 -- -- -- -- --
27.81 0.247 15.4 -- 0.937 -- -- -- 0.507 4.66 -- -- -- --
61.96 0.367 15.4 -- -- -0.752 -- -- 0.368 -- 25.8 2693 -- --
74.47 0.403 15.4 -- -- -- -- -- 0.528 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 17.50 humidity 90 14400 > th dose dependent rect. 5 1
2 17.56 radiation 1 14400 < th dose dependent rect. 4 1
6 17.68 humidity 90 43200 > th dose dependent rect. 13 1
7 17.72 temperature 10 720 > th dose dependent rect. 18 10
8 17.73 wind 5 43200 < th dose independent rect. 12 3
9 17.74 humidity 70 43200 < th dose dependent rect. 22 13
12 17.75 radiation 1 43200 < th dose dependent rect. 19 10
13 17.76 wind 5 43200 > th dose independent rect. 12 3
17 17.76 humidity 70 43200 < th dose dependent rect. 24 11
24 17.77 radiation 1 43200 < th dose independent rect. 18 11
25 17.77 humidity 70 43200 < th dose dependent rect. 8 3
30 17.78 radiation 1 43200 < th dose independent rect. 18 7
35 17.78 humidity 70 43200 < th dose dependent rect. 2 9
36 17.78 temperature 25 720 < th dose dependent rect. 16 10
41 17.79 radiation 1 43200 < th dose independent rect. 18 1
48 17.79 wind 1 43200 < th dose dependent rect. 24 1
52 17.79 humidity 70 43200 < th dose dependent rect. 4 7
66 17.80 temperature 10 720 > th dose dependent rect. 17 13
67 17.81 wind 3 43200 > th dose dependent rect. 13 2
76 17.84 humidity 60 43200 > th dose independent rect. 20 16
79 17.84 wind 9 43200 < th dose dependent rect. 13 1
95 17.88 humidity 60 43200 > th dose independent rect. 24 12
97 17.88 temperature 25 720 < th dose dependent sin 15 NA
101 17.88 wind 3 43200 > th dose dependent rect. 10 7
102 17.89 temperature 20 1440 < th dose independent rect. 5 1
122 17.91 radiation 1 43200 > th dose independent rect. 18 11
131 17.92 radiation 1 43200 > th dose independent rect. 18 1
132 17.92 radiation 30 43200 < th dose independent rect. 9 1
156 17.93 humidity 60 43200 < th dose independent rect. 19 18
173 17.95 wind 1 43200 < th dose dependent rect. 6 1
181 17.96 humidity 60 43200 < th dose independent sin 8 NA
182 17.96 humidity 90 14400 < th dose independent rect. 24 1
221 17.99 humidity 50 43200 > th dose independent rect. 15 1
227 17.99 humidity 60 43200 < th dose independent rect. 24 13
237 17.99 radiation 1 14400 < th dose dependent rect. 18 13
249 18.00 radiation 10 43200 > th dose dependent rect. 9 1
263 18.01 radiation 20 43200 > th dose independent rect. 6 4
291 18.02 humidity 60 43200 > th dose independent sin 8 NA
309 18.02 radiation 1 14400 < th dose dependent rect. 6 1
311 18.02 wind 3 43200 < th dose dependent rect. 19 3
319 18.02 humidity 60 43200 < th dose dependent rect. 21 19
323 18.03 wind 1 43200 > th dose independent rect. 24 1
346 18.03 humidity 60 43200 < th dose dependent sin 3 NA
362 18.03 humidity 60 43200 < th dose dependent rect. 6 10
393 18.04 humidity 70 43200 < th dose dependent sin 8 NA
394 18.04 humidity 60 43200 < th dose dependent sin 10 NA
404 18.04 humidity 60 43200 < th dose dependent rect. 8 8
426 18.05 humidity 70 43200 < th dose independent rect. 5 5
447 18.05 radiation 40 43200 > th dose dependent rect. 12 1
471 18.05 humidity 60 43200 < th dose dependent rect. 16 22
473 18.06 wind 1 43200 < th dose independent rect. 24 1
474 18.06 humidity 60 43200 > th dose independent rect. 11 1
522 18.07 wind 5 43200 < th dose independent sin 20 NA
524 18.07 temperature 15 43200 < th dose independent rect. 5 1
526 18.07 wind 1 43200 < th dose independent rect. 23 3
527 18.07 humidity 70 43200 < th dose independent rect. 7 3
578 18.08 radiation 20 43200 < th dose independent sin 7 NA
581 18.08 temperature 15 43200 < th dose independent rect. 10 1
582 18.08 radiation 10 43200 < th dose independent rect. 12 2
606 18.08 humidity 60 43200 < th dose dependent no NA NA
613 18.08 wind 1 43200 < th dose dependent rect. 21 5
626 18.08 humidity 60 43200 < th dose dependent rect. 4 18
628 18.08 humidity 60 43200 < th dose dependent rect. 2 19
661 18.08 humidity 60 43200 < th dose dependent rect. 11 23
667 18.09 wind 5 43200 > th dose independent sin 20 NA
671 18.09 wind 7 43200 < th dose independent rect. 10 2
694 18.09 humidity 50 43200 > th dose independent rect. 14 19
698 18.09 wind 3 43200 > th dose dependent sin 21 NA
714 18.09 wind 1 43200 < th dose dependent rect. 19 7
722 18.09 humidity 60 43200 < th dose dependent rect. 6 15
764 18.10 temperature 15 43200 > th dose independent rect. 10 1
834 18.11 wind 7 43200 > th dose independent rect. 10 2
838 18.11 temperature 15 43200 < th dose independent rect. 2 5
901 18.11 wind 9 43200 < th dose dependent rect. 9 12
917 18.12 temperature 15 43200 < th dose independent rect. 2 2
920 18.12 temperature 20 1440 < th dose independent rect. 4 3
937 18.12 temperature 15 43200 < th dose independent rect. 22 9
942 18.12 temperature 15 43200 < th dose independent rect. 1 10
973 18.12 temperature 15 43200 < th dose dependent rect. 2 1
975 18.12 radiation 1 14400 < th dose dependent rect. 18 1