Os07g0223400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to ADP-ribosylation factor 1.
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Os07g0223400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to ADP-ribosylation factor 1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.25 | 0.201 | 14.4 | -0.672 | 0.817 | 0.376 | -0.207 | -0.691 | -0.0969 | 0.33 | 22.4 | 1862 | -- | -- |
| 19.41 | 0.205 | 14.3 | -0.436 | 0.813 | 0.376 | -0.172 | -- | -0.0405 | 0.25 | 22.3 | 1851 | -- | -- |
| 18.43 | 0.2 | 14.4 | -0.67 | 0.816 | 0.377 | -- | -0.704 | -0.0971 | 0.342 | 22.4 | 1899 | -- | -- |
| 19.57 | 0.206 | 14.3 | -0.425 | 0.824 | 0.377 | -- | -- | -0.0363 | 0.306 | 22.36 | 1761 | -- | -- |
| 54.75 | 0.345 | 14.3 | -0.708 | -- | 0.659 | -- | -1.11 | -0.0584 | -- | 25.05 | 2377 | -- | -- |
| 24.84 | 0.234 | 14.3 | -0.291 | 0.829 | -- | -0.235 | -- | 0.0948 | 0.287 | -- | -- | -- | -- |
| 25.08 | 0.235 | 14.3 | -0.282 | 0.829 | -- | -- | -- | 0.0959 | 0.294 | -- | -- | -- | -- |
| 50.59 | 0.331 | 14.3 | -0.453 | -- | 0.685 | -- | -- | -0.134 | -- | 25.1 | 950 | -- | -- |
| 23.86 | 0.227 | 14.3 | -- | 0.822 | 0.28 | -- | -- | 0.0417 | 0.252 | 22.34 | 1629 | -- | -- |
| 68.33 | 0.386 | 14.3 | -0.254 | -- | -- | -- | -- | 0.109 | -- | -- | -- | -- | -- |
| 27.17 | 0.244 | 14.3 | -- | 0.825 | -- | -- | -- | 0.127 | 0.276 | -- | -- | -- | -- |
| 55.87 | 0.348 | 14.3 | -- | -- | 0.592 | -- | -- | -0.052 | -- | 25 | 910 | -- | -- |
| 70.04 | 0.391 | 14.3 | -- | -- | -- | -- | -- | 0.137 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.57 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 2 |
| 3 | 17.65 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 2 |
| 4 | 17.65 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 2 |
| 5 | 17.65 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 2 |
| 20 | 18.23 | radiation | 30.0 | 14400 | > th | dose independent | rect. | 16 | 16 |
| 23 | 18.25 | radiation | 30.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 38 | 18.28 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 40 | 18.28 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 18 | 14 |
| 44 | 18.31 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 2 | 6 |
| 46 | 18.31 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 49 | 18.33 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 20 | 12 |
| 51 | 18.33 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 23 | 3 |
| 52 | 18.34 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 22 | 10 |
| 53 | 18.34 | radiation | 20.0 | 14400 | > th | dose dependent | rect. | 6 | 2 |
| 96 | 18.42 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 98 | 18.43 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 18 | 12 |
| 99 | 18.43 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 14 | 16 |
| 100 | 18.43 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 18 | 16 |
| 132 | 18.47 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 136 | 18.48 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 138 | 18.48 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 4 |
| 139 | 18.48 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 7 |
| 144 | 18.48 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 7 |
| 154 | 18.49 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 161 | 18.50 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 18 | 4 |
| 203 | 18.53 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 5 |
| 214 | 18.54 | temperature | 30.0 | 1440 | < th | dose dependent | sin | 14 | NA |
| 215 | 18.54 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 24 | 1 |
| 228 | 18.55 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 2 | 3 |
| 299 | 18.59 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 15 | 15 |
| 345 | 18.62 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 4 | 2 |
| 346 | 18.62 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 2 | 3 |
| 352 | 18.62 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 24 | 6 |
| 373 | 18.63 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 374 | 18.63 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 7 |
| 408 | 18.64 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 429 | 18.65 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 442 | 18.65 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 461 | 18.66 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 6 |
| 469 | 18.66 | radiation | 1.0 | 43200 | > th | dose dependent | rect. | 18 | 11 |
| 484 | 18.67 | temperature | 10.0 | 1440 | > th | dose dependent | sin | 13 | NA |
| 548 | 18.69 | wind | 7.0 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 549 | 18.69 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 6 |
| 555 | 18.69 | radiation | 1.0 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 566 | 18.69 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 6 |
| 631 | 18.71 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 20 | 2 |
| 634 | 18.71 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 15 | 7 |
| 664 | 18.72 | radiation | 1.0 | 4320 | < th | dose dependent | sin | 10 | NA |
| 700 | 18.72 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 701 | 18.73 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 783 | 18.75 | temperature | 15.0 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 813 | 18.75 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 24 | 22 |
| 814 | 18.75 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 817 | 18.76 | temperature | 30.0 | 1440 | < th | dose dependent | no | NA | NA |
| 855 | 18.77 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 857 | 18.77 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 888 | 18.77 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 894 | 18.77 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 19 | 23 |
| 898 | 18.78 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 901 | 18.78 | temperature | 15.0 | 720 | > th | dose dependent | no | NA | NA |
| 984 | 18.79 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 4 | 23 |
| 985 | 18.79 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 986 | 18.79 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 4 | 23 |
| 988 | 18.79 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 17 | 23 |
| 990 | 18.80 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 996 | 18.80 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 7 |