Os03g0811900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to ADP-ribosylation factor.
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Os03g0811900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to ADP-ribosylation factor.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 115.13 | 0.504 | 14 | 0.309 | 0.567 | -2.55 | 0.165 | -8.26 | 0.361 | 3.49 | 59.51 | 23 | -- | -- |
| 129.05 | 0.529 | 14 | 0.252 | 0.541 | -2.1 | 0.696 | -- | 0.341 | 3.31 | 60 | 15 | -- | -- |
| 114.72 | 0.499 | 14 | 0.282 | 0.57 | -2.62 | -- | -8.48 | 0.353 | 3.41 | 60 | 23 | -- | -- |
| 129.94 | 0.531 | 14 | 0.254 | 0.545 | -2.25 | -- | -- | 0.345 | 3.63 | 60 | 15 | -- | -- |
| 131.82 | 0.535 | 14 | 0.33 | -- | -3.48 | -- | -10.9 | 0.372 | -- | 60.71 | 20 | -- | -- |
| 152.37 | 0.579 | 14 | 0.236 | 0.624 | -- | 0.729 | -- | 0.373 | 2.91 | -- | -- | -- | -- |
| 154.11 | 0.581 | 14 | 0.22 | 0.631 | -- | -- | -- | 0.368 | 3.11 | -- | -- | -- | -- |
| 147.07 | 0.565 | 14 | 0.277 | -- | -2.46 | -- | -- | 0.345 | -- | 60 | 15 | -- | -- |
| 131.57 | 0.534 | 14 | -- | 0.566 | -2.23 | -- | -- | 0.307 | 3.6 | 60 | 15 | -- | -- |
| 176.83 | 0.621 | 14 | 0.246 | -- | -- | -- | -- | 0.385 | -- | -- | -- | -- | -- |
| 155.38 | 0.583 | 14 | -- | 0.635 | -- | -- | -- | 0.344 | 3.11 | -- | -- | -- | -- |
| 149.08 | 0.569 | 14 | -- | -- | -2.45 | -- | -- | 0.316 | -- | 60 | 15 | -- | -- |
| 178.43 | 0.623 | 14 | -- | -- | -- | -- | -- | 0.357 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 112.55 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 8 | 1 |
| 2 | 112.55 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 8 | 1 |
| 3 | 112.66 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 9 | 4 |
| 4 | 112.66 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 9 | 4 |
| 5 | 113.08 | humidity | 90.0 | 720 | > th | dose independent | rect. | 10 | 1 |
| 9 | 113.11 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 10 | 1 |
| 33 | 116.13 | wind | 1.0 | 90 | < th | dose dependent | rect. | 11 | 1 |
| 34 | 117.47 | wind | 1.0 | 10 | < th | dose dependent | rect. | 11 | 1 |
| 40 | 118.85 | wind | 1.0 | 90 | < th | dose independent | rect. | 11 | 1 |
| 56 | 122.70 | wind | 1.0 | 10 | < th | dose independent | rect. | 11 | 1 |
| 80 | 127.15 | radiation | 40.0 | 30 | > th | dose dependent | rect. | 10 | 3 |
| 96 | 128.34 | radiation | 40.0 | 30 | > th | dose dependent | rect. | 14 | 23 |
| 181 | 128.82 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 6 | 1 |
| 182 | 128.82 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 6 | 1 |
| 189 | 129.10 | radiation | 40.0 | 30 | > th | dose dependent | sin | 23 | NA |
| 217 | 129.45 | radiation | 40.0 | 30 | > th | dose dependent | no | NA | NA |
| 438 | 130.06 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 10 | 1 |
| 506 | 130.76 | radiation | 40.0 | 10 | > th | dose independent | rect. | 10 | 3 |
| 808 | 131.79 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 9 | 1 |
| 809 | 131.79 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 9 | 1 |