BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0866100 Os01g0866100|AK068991
(203 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0866100 Similar to Actin 4 429 e-121
Os05g0438800 Similar to Actin 1 294 3e-80
Os03g0836000 Similar to Actin 7 (Actin 2) 289 1e-78
Os05g0106600 Similar to Actin 97 288 2e-78
Os03g0718100 Actin 1 288 2e-78
Os11g0163100 Similar to Actin 7 (Actin 2) 288 2e-78
Os01g0964400 Similar to Actin 7 (Actin 2) 286 6e-78
Os10g0510000 actin [Oryza sativa (japonica cultivar-group)] 286 7e-78
AK059967 274 4e-74
Os12g0163700 Similar to Actin 7 (Actin 2) 241 2e-64
Os12g0641000 Similar to Actin 1 159 1e-39
Os08g0369300 Similar to ARP2 (Actin-related protein 2) 136 1e-32
D21122 120 9e-28
Os08g0128300 Similar to Actin-like protein 3 (Actin-related... 114 7e-26
Os08g0137200 Actin/actin-like family protein 108 3e-24
Os02g0596900 Actin/actin-like family protein 107 8e-24
Os01g0269900 Actin/actin-like family protein 72 2e-13
Os03g0783000 Similar to Actin-related protein 7 64 6e-11
>Os01g0866100 Similar to Actin 4
Length = 203
Score = 429 bits (1102), Expect = e-121, Method: Compositional matrix adjust.
Identities = 203/203 (100%), Positives = 203/203 (100%)
Query: 1 MAEEDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQ 60
MAEEDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQ
Sbjct: 1 MAEEDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQ 60
Query: 61 SKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPMNPKANREKM 120
SKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPMNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPMNPKANREKM 120
Query: 121 TQIMFETFNCPAMYVAIQTMASHQGIPNVCNGLLCWVSPGNKDVCPCSLKAFCFEFSTSR 180
TQIMFETFNCPAMYVAIQTMASHQGIPNVCNGLLCWVSPGNKDVCPCSLKAFCFEFSTSR
Sbjct: 121 TQIMFETFNCPAMYVAIQTMASHQGIPNVCNGLLCWVSPGNKDVCPCSLKAFCFEFSTSR 180
Query: 181 IAGLNDCTSSFVFSLEDNLFLCT 203
IAGLNDCTSSFVFSLEDNLFLCT
Sbjct: 181 IAGLNDCTSSFVFSLEDNLFLCT 203
>Os05g0438800 Similar to Actin 1
Length = 376
Score = 294 bits (753), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 135/142 (95%), Positives = 140/142 (98%)
Query: 1 MAEEDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQ 60
MA+EDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQ
Sbjct: 1 MADEDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQ 60
Query: 61 SKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPMNPKANREKM 120
+KRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPE+HPVLLTEAP+NPKANREKM
Sbjct: 61 AKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEDHPVLLTEAPLNPKANREKM 120
Query: 121 TQIMFETFNCPAMYVAIQTMAS 142
TQIMFETFNCPAMYVAIQ + S
Sbjct: 121 TQIMFETFNCPAMYVAIQAVLS 142
>Os03g0836000 Similar to Actin 7 (Actin 2)
Length = 377
Score = 289 bits (739), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 132/139 (94%), Positives = 136/139 (97%)
Query: 4 EDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 63
EDIQP+VCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
Query: 64 GILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPMNPKANREKMTQI 123
GILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHP+LLTEAP+NPKANREKMTQI
Sbjct: 65 GILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQI 124
Query: 124 MFETFNCPAMYVAIQTMAS 142
MFETFN PAMYVAIQ + S
Sbjct: 125 MFETFNAPAMYVAIQAVLS 143
>Os05g0106600 Similar to Actin 97
Length = 377
Score = 288 bits (737), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 132/139 (94%), Positives = 136/139 (97%)
Query: 4 EDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 63
EDIQP+VCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
Query: 64 GILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPMNPKANREKMTQI 123
GILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP+NPKANREKMTQI
Sbjct: 65 GILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 124
Query: 124 MFETFNCPAMYVAIQTMAS 142
MFETFN PAMYVAIQ + S
Sbjct: 125 MFETFNVPAMYVAIQAVLS 143
>Os03g0718100 Actin 1
Length = 377
Score = 288 bits (737), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 132/139 (94%), Positives = 136/139 (97%)
Query: 4 EDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 63
EDIQP+VCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
Query: 64 GILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPMNPKANREKMTQI 123
GILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP+NPKANREKMTQI
Sbjct: 65 GILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 124
Query: 124 MFETFNCPAMYVAIQTMAS 142
MFETFN PAMYVAIQ + S
Sbjct: 125 MFETFNTPAMYVAIQAVLS 143
>Os11g0163100 Similar to Actin 7 (Actin 2)
Length = 377
Score = 288 bits (737), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 132/139 (94%), Positives = 136/139 (97%)
Query: 4 EDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 63
EDIQP+VCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
Query: 64 GILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPMNPKANREKMTQI 123
GILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP+NPKANREKMTQI
Sbjct: 65 GILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 124
Query: 124 MFETFNCPAMYVAIQTMAS 142
MFETFN PAMYVAIQ + S
Sbjct: 125 MFETFNVPAMYVAIQAVLS 143
>Os01g0964400 Similar to Actin 7 (Actin 2)
Length = 222
Score = 286 bits (732), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 138/169 (81%), Positives = 147/169 (86%), Gaps = 2/169 (1%)
Query: 4 EDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 63
EDIQP+VCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
Query: 64 GILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPMNPKANREKMTQI 123
GILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP+NPKANREKMTQI
Sbjct: 65 GILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 124
Query: 124 MFETFNCPAMYVAIQTMAS--HQGIPNVCNGLLCWVSPGNKDVCPCSLK 170
MFETFN PAMYVAIQ + S G + G+ +S + P S+K
Sbjct: 125 MFETFNVPAMYVAIQAVLSLYASGRTTMFPGIADRMSKEITALAPSSMK 173
>Os10g0510000 actin [Oryza sativa (japonica cultivar-group)]
Length = 377
Score = 286 bits (732), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 130/139 (93%), Positives = 136/139 (97%)
Query: 4 EDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 63
EDIQP+VCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
Query: 64 GILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPMNPKANREKMTQI 123
GILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHP+LLTEAP+NPKANREKMTQI
Sbjct: 65 GILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQI 124
Query: 124 MFETFNCPAMYVAIQTMAS 142
MFETF+ PAMYVAIQ + S
Sbjct: 125 MFETFSVPAMYVAIQAVLS 143
>AK059967
Length = 375
Score = 274 bits (700), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 125/139 (89%), Positives = 132/139 (94%)
Query: 4 EDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 63
+++Q +V DNGTGM KAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKD+YVGDEAQSKR
Sbjct: 3 DEVQALVIDNGTGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQSKR 62
Query: 64 GILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPMNPKANREKMTQI 123
GILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP+NPKANREKMTQI
Sbjct: 63 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 122
Query: 124 MFETFNCPAMYVAIQTMAS 142
MFETFN PAMYVAIQ + S
Sbjct: 123 MFETFNTPAMYVAIQAVLS 141
>Os12g0163700 Similar to Actin 7 (Actin 2)
Length = 363
Score = 241 bits (616), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 115/139 (82%), Positives = 119/139 (85%), Gaps = 17/139 (12%)
Query: 4 EDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 63
EDIQP+VCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
Query: 64 GILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPMNPKANREKMTQI 123
GILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPE EKMTQI
Sbjct: 65 GILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPE-----------------EKMTQI 107
Query: 124 MFETFNCPAMYVAIQTMAS 142
MFE+FN PAMYVAIQ + S
Sbjct: 108 MFESFNVPAMYVAIQAVLS 126
>Os12g0641000 Similar to Actin 1
Length = 243
Score = 159 bits (403), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 71/76 (93%), Positives = 73/76 (96%)
Query: 67 TLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPMNPKANREKMTQIMFE 126
TLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP+NPKANREKMTQIMFE
Sbjct: 1 TLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 60
Query: 127 TFNCPAMYVAIQTMAS 142
TFN PAMYVAIQ + S
Sbjct: 61 TFNAPAMYVAIQAVLS 76
>Os08g0369300 Similar to ARP2 (Actin-related protein 2)
Length = 441
Score = 136 bits (342), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 75/191 (39%), Positives = 106/191 (55%), Gaps = 8/191 (4%)
Query: 9 IVCDNGTGMVKAGFAGDDAPRAVFPSIVGRP--RHTGVMVGMGQKDAYVGDEAQSKRGIL 66
+VCDNGTG VK GFAG++ P +VFP +VGRP R+ + D VG R L
Sbjct: 7 VVCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLQEQELTDIVVGAACADLRHQL 66
Query: 67 TLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPMNPKANREKMTQIMFE 126
+ YP+ +GIV +WDDM IW H FY+EL+V P E +LLT+ P+NP NREKM + MFE
Sbjct: 67 DVSYPVTNGIVQSWDDMGHIWDHAFYSELKVDPSECKILLTDPPLNPVKNREKMIETMFE 126
Query: 127 TFNCPAMYVAIQTMAS--HQGIPNVCNGLLCWVSPGNKDVCPCSLKAFCFEFSTSRIAGL 184
+N +++ +Q + S QG+ GL+ G V P + F + T R+
Sbjct: 127 KYNFAGVFIQVQAVLSLYAQGL---LTGLVIDSGDGVTHVVPV-VDGFSYPHITKRMNVA 182
Query: 185 NDCTSSFVFSL 195
+S++ L
Sbjct: 183 GRHITSYLVDL 193
>D21122
Length = 120
Score = 120 bits (300), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 53/60 (88%), Positives = 55/60 (91%)
Query: 71 PIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPMNPKANREKMTQIMFETFNC 130
PIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHP+LLTEAP+NPKANR KM MFETF C
Sbjct: 1 PIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANRXKMPXXMFETFKC 60
>Os08g0128300 Similar to Actin-like protein 3 (Actin-related protein 3)
Length = 180
Score = 114 bits (284), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 86/155 (55%), Gaps = 24/155 (15%)
Query: 9 IVCDNGTGMVKAGFAGDDAPRAVFPSIVG------------------RPRHTGVMVGMGQ 50
+V DNGTG K GF+G+ P P++V + GVM +
Sbjct: 9 VVIDNGTGYSKLGFSGNSEPCFTIPTVVAVNESFLDQSEMCSSANWIAQYNAGVMADL-- 66
Query: 51 KDAYVGDEAQS---KRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLT 107
D ++GDEA S G+ T K+PI HG V++WD ME+ W +N LR PEEH LLT
Sbjct: 67 -DFFIGDEALSLFKSSGLYTRKHPINHGQVDDWDTMERFWQQCIFNYLRCNPEEHYFLLT 125
Query: 108 EAPMNPKANREKMTQIMFETFNCPAMYVAIQTMAS 142
++P++ +RE +IMFETFN P +Y+++Q++ S
Sbjct: 126 DSPVSTPESRECAGEIMFETFNVPGLYISVQSVLS 160
>Os08g0137200 Actin/actin-like family protein
Length = 443
Score = 108 bits (270), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 102/217 (47%), Gaps = 39/217 (17%)
Query: 4 EDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTG-------------------- 43
+++ IV D G+ KAG+AGDD P+AVFPS+VG TG
Sbjct: 5 DEVSAIVIDVGSYSCKAGYAGDDTPKAVFPSVVGSIEQTGETDEAKADKEAEAASDSKNG 64
Query: 44 -----VMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVA 98
V ++ YVG E + +R + + P++ G V +WD ++ IW+H F L +
Sbjct: 65 AKPMDVDKAKTKRKLYVGQELEFRRDHMEVISPMKDGTVTDWDIVDNIWNHAFRQRLLIN 124
Query: 99 PEEHPVLLTEAPMNPKANREKMTQIMFETFNCPAMYVA----IQTMASHQGIPNVCNGLL 154
PEEHP+L+ E N REK ++MFE + PA+++A + + AS + V +
Sbjct: 125 PEEHPMLIAEPSTNTGQQREKAAELMFEKYKVPALFLAKNAVLTSFASGRATSLVVD--- 181
Query: 155 CWVSPGNKDVCPCSLKAFCFEFS--TSRIAG--LNDC 187
S G V + + S TS I G L DC
Sbjct: 182 ---SGGGSTVVAAVHDGYVLQKSVATSPIGGEFLTDC 215
>Os02g0596900 Actin/actin-like family protein
Length = 428
Score = 107 bits (266), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 81/152 (53%), Gaps = 25/152 (16%)
Query: 9 IVCDNGTGMVKAGFAGDDAPRAVFPSIV-------GRPR------------HTGVMVGMG 49
+V DNGTG K GFAG+ P + P++V G+ R GVM +
Sbjct: 9 VVIDNGTGYTKMGFAGNVEPCFITPTVVAVNDTFAGQTRANTTKGNWMAQHSAGVMADL- 67
Query: 50 QKDAYVGDEAQSKR---GILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLL 106
D ++G++A ++ L YPI +G V NWD ME+ W +N LR PE+H LL
Sbjct: 68 --DFFIGEDALARSRSSNTYNLSYPIHNGQVENWDTMERFWQQCIFNYLRCDPEDHYFLL 125
Query: 107 TEAPMNPKANREKMTQIMFETFNCPAMYVAIQ 138
TE+P+ P RE +IMFETFN P +Y+A Q
Sbjct: 126 TESPLTPPETREYTGEIMFETFNVPGLYIACQ 157
>Os01g0269900 Actin/actin-like family protein
Length = 429
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 66/131 (50%), Gaps = 11/131 (8%)
Query: 9 IVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR---GI 65
+V DNG G++KAGF GD P AV P+ + +P G K V D+ Q++
Sbjct: 8 VVLDNGGGLLKAGFGGDMNPTAVVPNCMAKPP--------GSKKWLVADQLQAQDVDVTG 59
Query: 66 LTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPMNPKANREKMTQIMF 125
+TL+ PI+ G + N + ++W N L+V P +LL E NP A + +++F
Sbjct: 60 MTLRRPIDRGYLINQEVQREVWERVIRNLLQVDPNNSSLLLVEPQFNPPALQHATDELVF 119
Query: 126 ETFNCPAMYVA 136
E ++ VA
Sbjct: 120 EELGFKSLCVA 130
>Os03g0783000 Similar to Actin-related protein 7
Length = 162
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 78/164 (47%), Gaps = 17/164 (10%)
Query: 6 IQPIVCDNGTGMVKAGFA-GDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRG 64
++ +V D G+ ++KAG A D +P V PS + + +D +GD A +
Sbjct: 1 MEAVVVDAGSKLLKAGIALPDQSPSLVMPS----------KMKLEVEDGQMGDGAVVE-- 48
Query: 65 ILTLKYPIEHGIVNNWDDMEKIWHHTFYNELR-VAPEEHPVLLTEAPMNPKANREKMTQI 123
+ P+ G V +WD ME + ++ Y+ + +E +L TE PKA RE++ Q+
Sbjct: 49 --EVVQPVVRGFVKDWDAMEDLLNYVLYSNIGWEIGDEGQILFTEPLFTPKALREQLAQL 106
Query: 124 MFETFNCPAMYVAIQTMASHQGIPNVCNGLLCWVSPGNKDVCPC 167
MFE FN Y + Q + S + + +G + G D+ P
Sbjct: 107 MFEKFNVSGFYDSEQAVLSLYAVGRI-SGCTVDIGHGKIDIAPV 149
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.137 0.439
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,476,849
Number of extensions: 313640
Number of successful extensions: 534
Number of sequences better than 1.0e-10: 18
Number of HSP's gapped: 530
Number of HSP's successfully gapped: 18
Length of query: 203
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 107
Effective length of database: 12,023,257
Effective search space: 1286488499
Effective search space used: 1286488499
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 153 (63.5 bits)