Os01g0866100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Actin 4.
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Os01g0866100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Actin 4.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37.4 | 0.287 | 12.3 | 0.538 | 0.706 | 1.09 | -0.0736 | -0.574 | 0.367 | 4.39 | 21.2 | 2225 | -- | -- |
| 37.99 | 0.287 | 12.3 | 0.7 | 0.709 | 1.12 | -0.0653 | -- | 0.394 | 4.4 | 21.4 | 2224 | -- | -- |
| 37.11 | 0.284 | 12.3 | 0.568 | 0.718 | 1.07 | -- | -0.558 | 0.371 | 4.36 | 21.4 | 2115 | -- | -- |
| 37.94 | 0.287 | 12.3 | 0.702 | 0.724 | 1.12 | -- | -- | 0.401 | 4.35 | 21.4 | 2104 | -- | -- |
| 61.81 | 0.366 | 12.3 | 0.482 | -- | 1.15 | -- | -0.643 | 0.337 | -- | 21.3 | 2550 | -- | -- |
| 72.46 | 0.399 | 12.2 | 1.23 | 0.733 | -- | -0.191 | -- | 0.727 | 3.98 | -- | -- | -- | -- |
| 72.56 | 0.399 | 12.2 | 1.23 | 0.731 | -- | -- | -- | 0.729 | 3.95 | -- | -- | -- | -- |
| 62.64 | 0.369 | 12.3 | 0.62 | -- | 1.22 | -- | -- | 0.381 | -- | 21.33 | 2576 | -- | -- |
| 43.88 | 0.309 | 12.3 | -- | 0.661 | 1.66 | -- | -- | 0.263 | 4.19 | 19.36 | 8048 | -- | -- |
| 101.82 | 0.472 | 12.2 | 1.26 | -- | -- | -- | -- | 0.748 | -- | -- | -- | -- | -- |
| 112.3 | 0.496 | 12.2 | -- | 0.755 | -- | -- | -- | 0.592 | 3.93 | -- | -- | -- | -- |
| 70.86 | 0.392 | 12.3 | -- | -- | 1.67 | -- | -- | 0.301 | -- | 19.31 | 8203 | -- | -- |
| 143.56 | 0.559 | 12.2 | -- | -- | -- | -- | -- | 0.608 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 36.79 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 10 |
| 23 | 37.10 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 4 |
| 25 | 37.12 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 38 | 37.23 | temperature | 25 | 1440 | < th | dose dependent | sin | 11 | NA |
| 62 | 37.42 | temperature | 15 | 1440 | > th | dose dependent | rect. | 21 | 9 |
| 65 | 37.46 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 68 | 37.47 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 5 |
| 77 | 37.50 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 3 |
| 367 | 38.40 | temperature | 15 | 1440 | > th | dose dependent | sin | 11 | NA |
| 536 | 39.02 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 558 | 39.12 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 568 | 39.16 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 5 |
| 662 | 39.50 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 731 | 39.72 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 23 |
| 732 | 39.72 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 833 | 40.04 | temperature | 20 | 1440 | < th | dose independent | rect. | 19 | 11 |
| 856 | 40.10 | temperature | 20 | 1440 | > th | dose independent | rect. | 19 | 11 |
| 917 | 40.28 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 938 | 40.32 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |