Os03g0718100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Actin 1.
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Os03g0718100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Actin 1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.7 | 0.273 | 12 | 0.143 | 1.09 | 0.42 | -0.23 | -0.699 | -0.0897 | 6.78 | 25.61 | 234 | -- | -- |
| 34.38 | 0.273 | 12 | 0.0385 | 1.09 | 0.482 | -0.293 | -- | -0.096 | 6.77 | 25.6 | 273 | -- | -- |
| 33.83 | 0.271 | 12 | 0.151 | 1.09 | 0.417 | -- | -0.751 | -0.0888 | 6.79 | 25.6 | 244 | -- | -- |
| 34.66 | 0.274 | 12 | 0.0274 | 1.09 | 0.477 | -- | -- | -0.109 | 6.79 | 25.6 | 268 | -- | -- |
| 76.21 | 0.407 | 12 | 0.412 | -- | 1.46 | -- | -1.06 | 0.0683 | -- | 34.7 | 392 | -- | -- |
| 37.64 | 0.288 | 12 | -0.0912 | 1.15 | -- | -0.381 | -- | -0.214 | 6.59 | -- | -- | -- | -- |
| 38 | 0.289 | 12 | -0.0966 | 1.15 | -- | -- | -- | -0.213 | 6.62 | -- | -- | -- | -- |
| 77.04 | 0.409 | 12 | 0.226 | -- | 1.41 | -- | -- | 0.00614 | -- | 50.11 | 393 | -- | -- |
| 34.67 | 0.274 | 12 | -- | 1.08 | 0.471 | -- | -- | -0.114 | 6.77 | 25.6 | 273 | -- | -- |
| 106.8 | 0.483 | 12 | -0.0692 | -- | -- | -- | -- | -0.19 | -- | -- | -- | -- | -- |
| 38.25 | 0.289 | 12 | -- | 1.15 | -- | -- | -- | -0.202 | 6.62 | -- | -- | -- | -- |
| 78.29 | 0.412 | 12 | -- | -- | 1.33 | -- | -- | -0.0279 | -- | 35.81 | 392 | -- | -- |
| 106.92 | 0.483 | 12 | -- | -- | -- | -- | -- | -0.182 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.45 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 12 |
| 21 | 31.60 | temperature | 15 | 270 | > th | dose dependent | sin | 6 | NA |
| 29 | 31.65 | temperature | 25 | 270 | < th | dose dependent | rect. | 23 | 13 |
| 33 | 31.68 | temperature | 20 | 270 | > th | dose independent | rect. | 6 | 12 |
| 38 | 31.75 | temperature | 20 | 720 | > th | dose independent | rect. | 6 | 4 |
| 46 | 31.82 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 4 |
| 48 | 31.83 | temperature | 25 | 270 | < th | dose dependent | sin | 5 | NA |
| 55 | 31.88 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 4 |
| 66 | 31.94 | temperature | 15 | 720 | > th | dose dependent | rect. | 7 | 2 |
| 85 | 32.00 | temperature | 25 | 270 | < th | dose dependent | rect. | 23 | 20 |
| 102 | 32.08 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 3 |
| 144 | 32.24 | temperature | 15 | 90 | > th | dose dependent | rect. | 24 | 19 |
| 162 | 32.30 | temperature | 15 | 90 | > th | dose dependent | rect. | 7 | 12 |
| 165 | 32.33 | atmosphere | 1015 | 720 | < th | dose independent | rect. | 23 | 19 |
| 225 | 32.50 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 13 |
| 246 | 32.55 | temperature | 15 | 10 | > th | dose dependent | rect. | 24 | 20 |
| 297 | 32.66 | atmosphere | 1015 | 720 | < th | dose independent | rect. | 23 | 10 |
| 324 | 32.69 | radiation | 10 | 10 | < th | dose dependent | rect. | 6 | 23 |
| 357 | 32.75 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 22 |
| 376 | 32.77 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 401 | 32.81 | temperature | 15 | 720 | > th | dose independent | rect. | 24 | 10 |
| 472 | 32.91 | radiation | 10 | 10 | < th | dose independent | rect. | 7 | 22 |
| 482 | 32.93 | temperature | 20 | 270 | > th | dose independent | sin | 3 | NA |
| 492 | 32.95 | atmosphere | 1010 | 90 | < th | dose independent | rect. | 8 | 11 |
| 568 | 33.02 | temperature | 25 | 720 | < th | dose dependent | rect. | 7 | 5 |
| 596 | 33.05 | atmosphere | 1010 | 10 | < th | dose independent | rect. | 8 | 12 |
| 653 | 33.12 | temperature | 20 | 10 | > th | dose independent | rect. | 8 | 12 |
| 720 | 33.18 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 7 | 12 |
| 767 | 33.22 | temperature | 20 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 805 | 33.26 | atmosphere | 1015 | 720 | < th | dose independent | rect. | 22 | 13 |
| 863 | 33.30 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 2 |
| 868 | 33.30 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 8 | 12 |
| 888 | 33.32 | atmosphere | 1015 | 720 | < th | dose dependent | rect. | 7 | 2 |
| 901 | 33.32 | radiation | 10 | 10 | < th | dose dependent | rect. | 21 | 23 |