Os10g0510000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : actin [Oryza sativa (japonica cultivar-group)].
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Os10g0510000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : actin [Oryza sativa (japonica cultivar-group)].
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 142.67 | 0.561 | 9.99 | -0.908 | 5.54 | -6.91 | 3.61 | -2.85 | -0.441 | 7.07 | 0.8603 | 839 | -- | -- |
| 144.23 | 0.559 | 10 | -0.88 | 4.75 | -5.81 | 1.89 | -- | -0.434 | 7.2 | 1.102 | 845 | -- | -- |
| 145.24 | 0.561 | 10 | -0.92 | 4.85 | -5.92 | -- | 1.99 | -0.463 | 7.18 | 1.23 | 844 | -- | -- |
| 150.62 | 0.572 | 10 | -0.861 | 4.92 | -6.01 | -- | -- | -0.437 | 7.17 | 1.135 | 844 | -- | -- |
| 193.6 | 0.648 | 10.2 | -0.992 | -- | -2.46 | -- | 1.56 | -0.618 | -- | 2.246 | 3021 | -- | -- |
| 218.41 | 0.693 | 10.1 | -0.348 | 0.881 | -- | 0.527 | -- | -0.187 | 9.69 | -- | -- | -- | -- |
| 219.43 | 0.694 | 10.1 | -0.327 | 0.877 | -- | -- | -- | -0.185 | 9.79 | -- | -- | -- | -- |
| 192.31 | 0.646 | 10.2 | -0.768 | -- | -2.47 | -- | -- | -0.552 | -- | 1.76 | 3015 | -- | -- |
| 168.59 | 0.605 | 10 | -- | 4.78 | -5.78 | -- | -- | -0.357 | 7.15 | 1.733 | 834 | -- | -- |
| 265.31 | 0.761 | 10.1 | -0.336 | -- | -- | -- | -- | -0.185 | -- | -- | -- | -- | -- |
| 222.25 | 0.697 | 10.1 | -- | 0.878 | -- | -- | -- | -0.149 | 9.82 | -- | -- | -- | -- |
| 196.69 | 0.653 | 10.1 | -- | -- | -2.34 | -- | -- | -0.409 | -- | 1.991 | 1515 | -- | -- |
| 268.28 | 0.765 | 10.1 | -- | -- | -- | -- | -- | -0.148 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 142.18 | radiation | 1 | 720 | < th | dose dependent | sin | 16 | NA |
| 5 | 143.22 | radiation | 1 | 720 | < th | dose dependent | rect. | 8 | 19 |
| 13 | 144.38 | radiation | 1 | 720 | < th | dose dependent | rect. | 13 | 14 |
| 26 | 147.06 | radiation | 1 | 720 | < th | dose dependent | rect. | 8 | 11 |
| 28 | 147.38 | radiation | 1 | 720 | < th | dose independent | sin | 15 | NA |
| 31 | 147.54 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 22 |
| 34 | 147.97 | radiation | 1 | 720 | > th | dose independent | sin | 16 | NA |
| 44 | 148.72 | radiation | 1 | 720 | > th | dose independent | rect. | 8 | 22 |
| 48 | 148.80 | radiation | 1 | 720 | < th | dose dependent | rect. | 13 | 6 |
| 51 | 148.86 | radiation | 1 | 720 | < th | dose independent | rect. | 8 | 18 |
| 71 | 150.59 | radiation | 1 | 720 | < th | dose independent | rect. | 13 | 14 |
| 80 | 151.19 | radiation | 1 | 720 | < th | dose dependent | rect. | 9 | 21 |
| 86 | 151.40 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 91 | 151.82 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 19 |
| 97 | 152.00 | radiation | 1 | 720 | < th | dose dependent | rect. | 13 | 17 |
| 126 | 153.12 | humidity | 60 | 720 | > th | dose dependent | rect. | 17 | 4 |
| 128 | 153.16 | radiation | 1 | 720 | < th | dose independent | rect. | 8 | 11 |
| 136 | 153.47 | radiation | 1 | 720 | > th | dose independent | rect. | 11 | 8 |
| 208 | 154.23 | radiation | 1 | 720 | < th | dose dependent | rect. | 20 | 23 |
| 255 | 154.83 | temperature | 25 | 720 | > th | dose dependent | sin | 14 | NA |
| 257 | 154.84 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 18 |
| 276 | 155.09 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 9 |
| 320 | 155.63 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 22 |
| 333 | 155.76 | humidity | 70 | 720 | > th | dose independent | sin | 13 | NA |
| 345 | 155.99 | radiation | 1 | 720 | < th | dose dependent | no | NA | NA |
| 461 | 156.71 | humidity | 70 | 720 | > th | dose independent | rect. | 15 | 15 |
| 493 | 156.93 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 8 |
| 631 | 157.76 | humidity | 70 | 720 | > th | dose independent | rect. | 15 | 6 |
| 641 | 157.83 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 13 |
| 658 | 157.94 | radiation | 1 | 720 | < th | dose dependent | rect. | 22 | 23 |
| 726 | 158.50 | radiation | 1 | 1440 | < th | dose dependent | rect. | 22 | 21 |
| 733 | 158.53 | radiation | 1 | 1440 | < th | dose dependent | rect. | 24 | 19 |
| 736 | 158.53 | radiation | 1 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 740 | 158.55 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 17 |
| 745 | 158.56 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 21 |
| 820 | 159.16 | wind | 7 | 43200 | < th | dose independent | rect. | 12 | 10 |
| 822 | 159.17 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 14 |
| 825 | 159.18 | wind | 7 | 43200 | > th | dose independent | rect. | 12 | 9 |
| 848 | 159.33 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 875 | 159.73 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 8 |
| 922 | 160.16 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 11 |
| 937 | 160.24 | radiation | 1 | 720 | < th | dose independent | rect. | 20 | 23 |
| 950 | 160.32 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 984 | 160.57 | radiation | 1 | 720 | > th | dose independent | rect. | 5 | 14 |