Os12g0163700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Actin 7 (Actin 2).
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Os12g0163700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Actin 7 (Actin 2).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 218.6 | 0.695 | 6.82 | 6.33 | 0.336 | 250 | -1.52 | 520 | -0.299 | 15.2 | 15 | 4443 | -- | -- |
| 243.75 | 0.733 | 3.29 | -1.71 | 0.32 | 2.23 | -1.51 | -- | -0.432 | 15.6 | 14.78 | 3911 | -- | -- |
| 225.28 | 0.699 | 6.82 | 6.31 | 0.323 | 251 | -- | 520 | -0.304 | 14.2 | 15 | 4322 | -- | -- |
| 231.77 | 0.709 | 3.23 | -1.02 | 0.263 | 1.57 | -- | -- | -0.144 | 15.5 | 21.89 | 5308 | -- | -- |
| 231.49 | 0.709 | 6.82 | 6.32 | -- | 251 | -- | 521 | -0.299 | -- | 15 | 4298 | -- | -- |
| 253.07 | 0.746 | 3.3 | -1.81 | 0.286 | -- | -1.41 | -- | -0.456 | 16.1 | -- | -- | -- | -- |
| 258.03 | 0.752 | 3.3 | -1.82 | 0.289 | -- | -- | -- | -0.464 | 14.6 | -- | -- | -- | -- |
| 235.28 | 0.714 | 3.23 | -1.02 | -- | 1.61 | -- | -- | -0.14 | -- | 21.95 | 5325 | -- | -- |
| 236.91 | 0.717 | 3.18 | -- | 0.261 | 2.03 | -- | -- | 0.0754 | 14.7 | 21.16 | 12424 | -- | -- |
| 262.91 | 0.758 | 3.3 | -1.84 | -- | -- | -- | -- | -0.471 | -- | -- | -- | -- | -- |
| 345.71 | 0.87 | 3.26 | -- | 0.325 | -- | -- | -- | -0.261 | 14.7 | -- | -- | -- | -- |
| 241.07 | 0.723 | 3.18 | -- | -- | 2.08 | -- | -- | 0.0899 | -- | 21.3 | 12437 | -- | -- |
| 351.86 | 0.876 | 3.26 | -- | -- | -- | -- | -- | -0.267 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 212.63 | temperature | 15 | 4320 | < th | dose dependent | rect. | 23 | 5 |
| 3 | 213.20 | temperature | 15 | 4320 | < th | dose dependent | rect. | 24 | 3 |
| 36 | 215.25 | temperature | 15 | 4320 | < th | dose dependent | sin | 9 | NA |
| 92 | 216.79 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 1 |
| 123 | 217.28 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 1 |
| 162 | 217.72 | temperature | 15 | 4320 | > th | dose independent | rect. | 2 | 4 |
| 163 | 217.72 | temperature | 15 | 4320 | < th | dose independent | rect. | 2 | 4 |
| 222 | 218.70 | temperature | 15 | 4320 | < th | dose dependent | no | NA | NA |
| 235 | 218.80 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 5 |
| 285 | 219.36 | temperature | 15 | 4320 | < th | dose dependent | rect. | 4 | 23 |
| 361 | 220.12 | temperature | 20 | 4320 | > th | dose independent | sin | 15 | NA |
| 372 | 220.22 | temperature | 20 | 4320 | < th | dose independent | sin | 15 | NA |
| 482 | 220.98 | temperature | 15 | 4320 | < th | dose independent | sin | 9 | NA |
| 485 | 221.01 | temperature | 15 | 4320 | > th | dose independent | sin | 10 | NA |
| 879 | 222.94 | temperature | 15 | 4320 | < th | dose independent | rect. | 23 | 18 |
| 880 | 222.94 | radiation | 20 | 1440 | > th | dose dependent | rect. | 16 | 15 |
| 891 | 223.01 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 2 |
| 897 | 223.04 | temperature | 20 | 4320 | < th | dose independent | no | NA | NA |
| 911 | 223.08 | temperature | 20 | 4320 | > th | dose independent | no | NA | NA |
| 920 | 223.10 | temperature | 20 | 4320 | > th | dose independent | rect. | 5 | 23 |
| 962 | 223.23 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 23 |
| 975 | 223.26 | temperature | 20 | 4320 | > th | dose independent | rect. | 24 | 23 |
| 976 | 223.26 | temperature | 20 | 4320 | < th | dose independent | rect. | 1 | 23 |
| 988 | 223.28 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 23 |