Os08g0137200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Actin/actin-like family protein.
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Os08g0137200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Actin/actin-like family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.87 | 0.215 | 11.3 | 0.407 | 0.485 | 0.607 | 0.0112 | -0.195 | 0.165 | 18.9 | 20.6 | 1790 | -- | -- |
| 20.95 | 0.213 | 11.3 | 0.438 | 0.489 | 0.633 | 0.0292 | -- | 0.172 | 18.9 | 20.6 | 1783 | -- | -- |
| 20.87 | 0.213 | 11.3 | 0.407 | 0.485 | 0.607 | -- | -0.195 | 0.165 | 18.9 | 20.6 | 1790 | -- | -- |
| 20.95 | 0.213 | 11.3 | 0.446 | 0.485 | 0.629 | -- | -- | 0.174 | 18.9 | 20.6 | 1789 | -- | -- |
| 32.89 | 0.267 | 11.3 | 0.404 | -- | 0.638 | -- | -0.0708 | 0.156 | -- | 20.5 | 2011 | -- | -- |
| 29.54 | 0.255 | 11.2 | 0.723 | 0.492 | -- | 0.0954 | -- | 0.32 | 19 | -- | -- | -- | -- |
| 29.57 | 0.255 | 11.2 | 0.722 | 0.493 | -- | -- | -- | 0.321 | 18.9 | -- | -- | -- | -- |
| 32.9 | 0.267 | 11.3 | 0.407 | -- | 0.655 | -- | -- | 0.154 | -- | 20.46 | 1997 | -- | -- |
| 23.36 | 0.225 | 11.3 | -- | 0.506 | 0.869 | -- | -- | 0.081 | 18.8 | 19.9 | 3056 | -- | -- |
| 42.32 | 0.304 | 11.2 | 0.711 | -- | -- | -- | -- | 0.311 | -- | -- | -- | -- | -- |
| 43.3 | 0.308 | 11.3 | -- | 0.485 | -- | -- | -- | 0.24 | 19 | -- | -- | -- | -- |
| 35.72 | 0.278 | 11.3 | -- | -- | 0.896 | -- | -- | 0.0738 | -- | 19.19 | 7768 | -- | -- |
| 55.67 | 0.348 | 11.3 | -- | -- | -- | -- | -- | 0.232 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.64 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 2 | 19.73 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 14 | 20.29 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 5 |
| 19 | 20.34 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 5 |
| 27 | 20.44 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 11 |
| 39 | 20.51 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 10 |
| 80 | 20.62 | temperature | 20 | 1440 | > th | dose independent | sin | 9 | NA |
| 113 | 20.70 | temperature | 20 | 1440 | < th | dose independent | sin | 9 | NA |
| 327 | 21.14 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 329 | 21.14 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 407 | 21.24 | temperature | 20 | 4320 | > th | dose independent | sin | 17 | NA |
| 450 | 21.27 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 8 |
| 568 | 21.37 | temperature | 20 | 4320 | < th | dose independent | sin | 17 | NA |
| 655 | 21.42 | temperature | 25 | 1440 | < th | dose dependent | sin | 10 | NA |
| 728 | 21.48 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 773 | 21.51 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 816 | 21.54 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 881 | 21.59 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 941 | 21.63 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 23 |