Os01g0269900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Actin/actin-like family protein.
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Os01g0269900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Actin/actin-like family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16.6 | 0.191 | 9.82 | 0.866 | 0.232 | -0.414 | 0.115 | 0.785 | 0.0156 | 13.5 | 22.4 | 1614 | -- | -- |
| 17.79 | 0.196 | 9.85 | 0.662 | 0.227 | -0.488 | 0.13 | -- | -0.0638 | 13.4 | 21.4 | 1705 | -- | -- |
| 16.64 | 0.19 | 9.82 | 0.875 | 0.232 | -0.412 | -- | 0.796 | 0.0185 | 13.6 | 22.53 | 1613 | -- | -- |
| 17.82 | 0.197 | 9.85 | 0.66 | 0.238 | -0.484 | -- | -- | -0.0532 | 13.7 | 21.56 | 1663 | -- | -- |
| 19.69 | 0.207 | 9.81 | 0.914 | -- | -0.434 | -- | 0.842 | 0.0436 | -- | 22.7 | 2215 | -- | -- |
| 24.73 | 0.233 | 9.88 | 0.446 | 0.238 | -- | 0.0978 | -- | -0.197 | 13.5 | -- | -- | -- | -- |
| 24.77 | 0.233 | 9.88 | 0.449 | 0.239 | -- | -- | -- | -0.196 | 13.6 | -- | -- | -- | -- |
| 20.69 | 0.212 | 9.85 | 0.584 | -- | -0.418 | -- | -- | -0.0591 | -- | 22.23 | 1025 | -- | -- |
| 26.74 | 0.241 | 9.87 | -- | 0.218 | -0.281 | -- | -- | -0.151 | 13.3 | 22.5 | 1500 | -- | -- |
| 28.25 | 0.248 | 9.88 | 0.439 | -- | -- | -- | -- | -0.201 | -- | -- | -- | -- | -- |
| 30.08 | 0.257 | 9.89 | -- | 0.231 | -- | -- | -- | -0.246 | 13.6 | -- | -- | -- | -- |
| 28.87 | 0.25 | 9.87 | -- | -- | -0.299 | -- | -- | -0.158 | -- | 22.37 | 889 | -- | -- |
| 33.34 | 0.269 | 9.89 | -- | -- | -- | -- | -- | -0.25 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 16.75 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 12 |
| 5 | 16.77 | temperature | 20 | 720 | > th | dose dependent | rect. | 16 | 17 |
| 13 | 16.80 | temperature | 15 | 1440 | > th | dose dependent | rect. | 16 | 12 |
| 21 | 16.81 | temperature | 15 | 720 | > th | dose dependent | rect. | 14 | 19 |
| 30 | 16.84 | temperature | 30 | 1440 | < th | dose dependent | sin | 14 | NA |
| 67 | 16.88 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 105 | 16.91 | temperature | 15 | 1440 | > th | dose dependent | sin | 14 | NA |
| 250 | 17.02 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 341 | 17.07 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 413 | 17.11 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 526 | 17.16 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 710 | 17.26 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 10 |
| 766 | 17.29 | temperature | 30 | 1440 | < th | dose dependent | no | NA | NA |
| 789 | 17.30 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 802 | 17.30 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 23 |
| 818 | 17.31 | humidity | 90 | 14400 | > th | dose dependent | rect. | 14 | 15 |
| 832 | 17.31 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 23 |
| 855 | 17.32 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 23 |
| 857 | 17.32 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 23 |