Os05g0106600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Actin 97.
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Os05g0106600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Actin 97.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 15.41 | 0.184 | 13.3 | 0.0611 | 0.208 | 0.959 | 0.473 | -0.665 | 0.113 | 21.1 | 20.87 | 998 | -- | -- |
| 15.59 | 0.184 | 13.2 | 0.212 | 0.289 | 0.925 | 0.42 | -- | 0.156 | 20.7 | 20.02 | 1092 | -- | -- |
| 16.06 | 0.187 | 13.3 | 0.113 | 0.208 | 0.956 | -- | -0.369 | 0.128 | 21.1 | 20.4 | 989 | -- | -- |
| 16.09 | 0.187 | 13.2 | 0.202 | 0.206 | 0.954 | -- | -- | 0.152 | 21 | 20.02 | 987 | -- | -- |
| 17.24 | 0.193 | 13.2 | 0.117 | -- | 1.1 | -- | -0.3 | 0.12 | -- | 20.22 | 852 | -- | -- |
| 37.33 | 0.286 | 13.2 | 0.519 | 0.41 | -- | 0.469 | -- | 0.347 | 22 | -- | -- | -- | -- |
| 38.2 | 0.289 | 13.2 | 0.501 | 0.407 | -- | -- | -- | 0.346 | 22 | -- | -- | -- | -- |
| 17.29 | 0.194 | 13.2 | 0.187 | -- | 1.09 | -- | -- | 0.14 | -- | 20.07 | 850 | -- | -- |
| 16.99 | 0.192 | 13.3 | -- | 0.259 | 1.01 | -- | -- | 0.117 | 20.6 | 19.32 | 1076 | -- | -- |
| 48.2 | 0.324 | 13.2 | 0.506 | -- | -- | -- | -- | 0.347 | -- | -- | -- | -- | -- |
| 44.8 | 0.313 | 13.2 | -- | 0.409 | -- | -- | -- | 0.29 | 22.1 | -- | -- | -- | -- |
| 18.08 | 0.198 | 13.2 | -- | -- | 1.16 | -- | -- | 0.108 | -- | 19.4 | 858 | -- | -- |
| 54.94 | 0.346 | 13.2 | -- | -- | -- | -- | -- | 0.29 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 15.10 | temperature | 20 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 10 | 15.53 | temperature | 20 | 1440 | > th | dose dependent | sin | 13 | NA |
| 14 | 15.59 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 11 |
| 15 | 15.60 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 9 |
| 17 | 15.60 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 13 |
| 18 | 15.60 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 17 |
| 33 | 15.65 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 2 |
| 114 | 15.90 | temperature | 20 | 720 | > th | dose dependent | rect. | 8 | 23 |
| 123 | 15.92 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 143 | 15.98 | temperature | 20 | 720 | > th | dose dependent | no | NA | NA |
| 150 | 15.98 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 23 |
| 173 | 16.02 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 518 | 16.47 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 10 |
| 533 | 16.49 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 8 |
| 547 | 16.50 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 18 |
| 616 | 16.58 | temperature | 30 | 1440 | < th | dose dependent | sin | 14 | NA |
| 705 | 16.66 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 16 |