Os11g0163100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Actin 7 (Actin 2).
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Os11g0163100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Actin 7 (Actin 2).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.94 | 0.261 | 14.5 | 0.632 | 0.878 | -0.903 | 0.559 | -1.02 | 0.242 | 2.49 | 25.2 | 263 | -- | -- |
| 32.63 | 0.266 | 14.5 | 0.577 | 0.866 | -0.736 | 0.543 | -- | 0.253 | 2.54 | 25.69 | 297 | -- | -- |
| 31.89 | 0.263 | 14.5 | 0.574 | 0.869 | -0.876 | -- | -0.698 | 0.226 | 2.54 | 25.3 | 284 | -- | -- |
| 32.67 | 0.266 | 14.5 | 0.518 | 0.869 | -0.758 | -- | -- | 0.234 | 2.57 | 25.67 | 292 | -- | -- |
| 61.14 | 0.364 | 14.5 | 0.54 | -- | -0.972 | -- | -0.576 | 0.219 | -- | 26.6 | 1025 | -- | -- |
| 41.92 | 0.304 | 14.5 | 0.675 | 0.753 | -- | 0.332 | -- | 0.376 | 2.22 | -- | -- | -- | -- |
| 42.33 | 0.305 | 14.5 | 0.665 | 0.754 | -- | -- | -- | 0.374 | 2.24 | -- | -- | -- | -- |
| 62.04 | 0.367 | 14.5 | 0.414 | -- | -0.95 | -- | -- | 0.179 | -- | 27 | 1026 | -- | -- |
| 37.81 | 0.286 | 14.5 | -- | 0.909 | -0.97 | -- | -- | 0.166 | 2.61 | 25.6 | 283 | -- | -- |
| 76.2 | 0.408 | 14.5 | 0.697 | -- | -- | -- | -- | 0.392 | -- | -- | -- | -- | -- |
| 53.99 | 0.344 | 14.5 | -- | 0.767 | -- | -- | -- | 0.3 | 2.26 | -- | -- | -- | -- |
| 65.95 | 0.378 | 14.5 | -- | -- | -1.13 | -- | -- | 0.0965 | -- | 27.01 | 1043 | -- | -- |
| 89.02 | 0.44 | 14.5 | -- | -- | -- | -- | -- | 0.315 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.59 | temperature | 15 | 270 | > th | dose dependent | rect. | 20 | 8 |
| 18 | 26.37 | temperature | 20 | 90 | > th | dose independent | rect. | 21 | 8 |
| 26 | 27.26 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 6 |
| 41 | 27.99 | temperature | 20 | 270 | > th | dose independent | rect. | 9 | 18 |
| 48 | 28.10 | temperature | 20 | 10 | > th | dose independent | rect. | 22 | 7 |
| 51 | 28.18 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 17 |
| 64 | 28.42 | temperature | 20 | 270 | > th | dose independent | rect. | 8 | 20 |
| 67 | 28.49 | temperature | 20 | 90 | > th | dose independent | rect. | 11 | 18 |
| 68 | 28.49 | temperature | 20 | 10 | > th | dose independent | rect. | 10 | 19 |
| 81 | 28.62 | temperature | 15 | 10 | > th | dose dependent | rect. | 10 | 19 |
| 87 | 28.68 | temperature | 10 | 270 | > th | dose dependent | rect. | 8 | 19 |
| 118 | 29.17 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 21 |
| 176 | 29.73 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 17 |
| 181 | 29.76 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 17 |
| 186 | 29.81 | temperature | 10 | 270 | > th | dose dependent | rect. | 18 | 22 |
| 283 | 30.52 | temperature | 25 | 270 | < th | dose dependent | sin | 11 | NA |
| 322 | 30.72 | temperature | 25 | 720 | < th | dose dependent | rect. | 15 | 10 |
| 333 | 30.76 | temperature | 25 | 720 | < th | dose dependent | rect. | 11 | 14 |
| 372 | 30.91 | temperature | 25 | 720 | < th | dose dependent | sin | 18 | NA |
| 392 | 30.99 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 461 | 31.19 | temperature | 25 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 480 | 31.28 | temperature | 25 | 270 | < th | dose dependent | rect. | 3 | 23 |
| 484 | 31.29 | temperature | 25 | 270 | < th | dose dependent | rect. | 21 | 23 |
| 498 | 31.34 | temperature | 10 | 270 | > th | dose dependent | sin | 10 | NA |
| 525 | 31.44 | temperature | 20 | 10 | > th | dose independent | rect. | 23 | 17 |
| 763 | 32.13 | temperature | 25 | 270 | < th | dose independent | rect. | 14 | 19 |
| 798 | 32.23 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 889 | 32.45 | radiation | 10 | 30 | < th | dose dependent | sin | 9 | NA |
| 959 | 32.62 | radiation | 1 | 90 | < th | dose independent | sin | 9 | NA |