Os12g0641000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Actin 1.
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Os12g0641000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Actin 1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 172.54 | 0.617 | 6.35 | 1.37 | 0.752 | -1.16 | -0.229 | -1.4 | -0.505 | 7.79 | 21.5 | 1364 | -- | -- |
| 173.73 | 0.614 | 6.3 | 1.67 | 0.646 | -1.01 | -0.289 | -- | -0.424 | 7.29 | 21.8 | 979 | -- | -- |
| 172.69 | 0.612 | 6.35 | 1.37 | 0.752 | -1.16 | -- | -1.4 | -0.505 | 7.8 | 21.5 | 1364 | -- | -- |
| 173.64 | 0.614 | 6.31 | 1.65 | 0.602 | -0.971 | -- | -- | -0.434 | 7.21 | 21.8 | 862 | -- | -- |
| 189.57 | 0.641 | 6.34 | 1.46 | -- | -1.15 | -- | -0.841 | -0.452 | -- | 21.8 | 796 | -- | -- |
| 211.65 | 0.682 | 6.37 | 1.3 | 0.749 | -- | -0.21 | -- | -0.734 | 8.06 | -- | -- | -- | -- |
| 211.78 | 0.681 | 6.37 | 1.3 | 0.749 | -- | -- | -- | -0.734 | 8.07 | -- | -- | -- | -- |
| 191.47 | 0.644 | 6.31 | 1.67 | -- | -1.08 | -- | -- | -0.383 | -- | 21.97 | 758 | -- | -- |
| 237.38 | 0.718 | 6.36 | -- | 0.645 | -0.626 | -- | -- | -0.673 | 7.68 | 22.3 | 738 | -- | -- |
| 242.5 | 0.728 | 6.39 | 1.3 | -- | -- | -- | -- | -0.724 | -- | -- | -- | -- | -- |
| 255.99 | 0.748 | 6.4 | -- | 0.757 | -- | -- | -- | -0.878 | 7.95 | -- | -- | -- | -- |
| 259.51 | 0.75 | 6.37 | -- | -- | -0.743 | -- | -- | -0.646 | -- | 22.24 | 734 | -- | -- |
| 287.21 | 0.791 | 6.42 | -- | -- | -- | -- | -- | -0.869 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 161.13 | wind | 9.0 | 14400 | < th | dose independent | rect. | 5 | 8 |
| 4 | 161.88 | wind | 9.0 | 14400 | > th | dose independent | rect. | 5 | 8 |
| 6 | 162.87 | wind | 9.0 | 14400 | < th | dose independent | rect. | 1 | 12 |
| 13 | 163.88 | wind | 9.0 | 14400 | < th | dose independent | rect. | 10 | 3 |
| 17 | 164.14 | wind | 9.0 | 14400 | > th | dose independent | rect. | 10 | 3 |
| 27 | 164.66 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 5 | 8 |
| 30 | 165.26 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 11 | 2 |
| 71 | 172.01 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 89 | 172.58 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 91 | 172.73 | wind | 9.0 | 14400 | < th | dose independent | sin | 5 | NA |
| 95 | 173.08 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 96 | 173.22 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 20 | 17 |
| 98 | 173.30 | wind | 3.0 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 99 | 173.35 | temperature | 15.0 | 270 | > th | dose dependent | sin | 7 | NA |
| 100 | 173.38 | wind | 3.0 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 105 | 173.53 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 109 | 173.71 | wind | 3.0 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 115 | 173.98 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 24 | 20 |
| 116 | 174.12 | wind | 9.0 | 14400 | > th | dose independent | sin | 5 | NA |
| 124 | 174.33 | temperature | 30.0 | 270 | < th | dose dependent | sin | 7 | NA |
| 128 | 174.50 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 131 | 174.55 | wind | 3.0 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 132 | 174.60 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 133 | 174.60 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 136 | 174.64 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 153 | 175.15 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 24 | 15 |
| 154 | 175.17 | wind | 3.0 | 14400 | < th | dose independent | rect. | 1 | 6 |
| 157 | 175.23 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 4 |
| 158 | 175.23 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 4 |
| 166 | 175.41 | wind | 3.0 | 14400 | > th | dose independent | rect. | 1 | 6 |
| 173 | 175.56 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 4 |
| 174 | 175.56 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 7 |
| 182 | 175.82 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 24 | 10 |
| 183 | 175.83 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 4 |
| 219 | 176.66 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 6 |
| 224 | 176.71 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 6 |
| 226 | 176.71 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 6 |
| 229 | 176.74 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 4 | 3 |
| 233 | 176.78 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 3 | 4 |
| 250 | 176.97 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 6 |
| 255 | 177.00 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 264 | 177.17 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 266 | 177.19 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 281 | 177.30 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 3 | 1 |
| 291 | 177.37 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 313 | 177.61 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 334 | 177.76 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 1 | 2 |
| 357 | 177.99 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 381 | 178.15 | wind | 9.0 | 14400 | > th | dose dependent | sin | 5 | NA |
| 402 | 178.31 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 16 | 6 |
| 429 | 178.51 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 21 | 2 |
| 452 | 178.71 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 458 | 178.74 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 459 | 178.74 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 484 | 178.92 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 501 | 179.07 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 14 |
| 505 | 179.09 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 23 | 17 |
| 512 | 179.13 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 1 | 6 |
| 513 | 179.13 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 14 | 13 |
| 519 | 179.17 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 552 | 179.32 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 11 | 2 |
| 561 | 179.35 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 1 | 6 |
| 563 | 179.36 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 20 | 2 |
| 586 | 179.47 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 20 | 3 |
| 587 | 179.47 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 20 | 3 |
| 597 | 179.53 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 20 | 3 |
| 603 | 179.55 | temperature | 25.0 | 1440 | < th | dose dependent | sin | 16 | NA |
| 607 | 179.56 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 3 | 1 |
| 667 | 179.80 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 11 | 16 |
| 686 | 179.85 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 11 | 18 |
| 687 | 179.86 | wind | 3.0 | 14400 | < th | dose independent | rect. | 1 | 12 |
| 718 | 180.03 | wind | 5.0 | 4320 | > th | dose independent | rect. | 20 | 6 |
| 728 | 180.06 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 730 | 180.06 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 743 | 180.12 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 744 | 180.12 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 784 | 180.30 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 786 | 180.31 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 788 | 180.31 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 9 | 22 |
| 805 | 180.39 | wind | 3.0 | 14400 | > th | dose independent | rect. | 1 | 12 |
| 825 | 180.48 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 3 | 9 |
| 856 | 180.58 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 16 | 20 |
| 860 | 180.60 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 21 | 19 |
| 899 | 180.73 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 8 | 7 |
| 903 | 180.74 | wind | 5.0 | 4320 | < th | dose independent | rect. | 20 | 6 |
| 908 | 180.74 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 19 | 20 |
| 934 | 180.80 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 23 | 8 |
| 941 | 180.81 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 3 | 10 |
| 965 | 180.86 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 3 | 9 |