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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0438800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Actin 1.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.97 (0.0354) R2 : 0.305
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.739 (0.0829) R2dC : 0.122 R2C : 0.0868
β3 : -1.69 (0.199) R2dE : 0.126 R2E : -0.000803
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.717 (0.0784) R2dN8 : 0.189 R2N8 : 0.0517
σ : 0.653
deviance : 196.8
__
_____
C
peak time of C : 11.7
E
wheather : atmosphere
threshold : 1022
memory length : 56
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
192.02 0.651 3.96 0.415 0.736 -1.69 0.126 0.831 -0.696 11.7 1014 55 -- --
192.57 0.646 3.96 0.381 0.737 -1.66 0.118 -- -0.688 11.7 1014 58 -- --
192.08 0.645 3.96 0.416 0.736 -1.69 -- 0.83 -0.695 11.7 1014 55 -- --
192.6 0.646 3.96 0.391 0.735 -1.64 -- -- -0.685 11.7 1014 58 -- --
224.02 0.697 3.97 0.429 -- -1.75 -- 1.06 -0.715 -- 1014 280 -- --
225.17 0.703 3.9 0.299 0.766 -- 0.0569 -- -0.448 11.3 -- -- -- --
225.19 0.703 3.9 0.301 0.766 -- -- -- -0.447 11.3 -- -- -- --
224.94 0.699 3.98 0.393 -- -1.7 -- -- -0.704 -- 1014 261 -- --
196.8 0.653 3.97 -- 0.739 -1.69 -- -- -0.717 11.7 1022 56 -- --
261.89 0.756 3.92 0.282 -- -- -- -- -0.455 -- -- -- -- --
227.57 0.706 3.91 -- 0.763 -- -- -- -0.481 11.3 -- -- -- --
229 0.705 3.99 -- -- -1.66 -- -- -0.74 -- 1014 239 -- --
263.98 0.758 3.93 -- -- -- -- -- -0.486 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 188.37 atmosphere 1015 30 < th dose dependent rect. 1 23
3 189.62 atmosphere 1000 30 > th dose dependent rect. 11 23
4 189.83 temperature 20 720 > th dose dependent rect. 21 16
6 189.94 temperature 20 720 > th dose dependent rect. 23 14
11 190.31 temperature 10 720 > th dose dependent rect. 20 17
13 190.46 temperature 20 720 > th dose dependent rect. 1 12
14 190.49 temperature 20 720 > th dose dependent sin 6 NA
19 190.93 temperature 25 270 < th dose independent rect. 8 4
26 191.20 atmosphere 1000 30 > th dose dependent rect. 13 23
29 191.28 temperature 20 270 > th dose dependent rect. 19 22
31 191.31 temperature 20 270 > th dose dependent sin 2 NA
49 191.63 temperature 10 720 > th dose dependent rect. 1 15
61 191.72 temperature 30 720 < th dose dependent sin 5 NA
67 191.78 atmosphere 1010 90 < th dose dependent rect. 11 22
70 191.82 temperature 10 720 > th dose dependent rect. 4 9
75 191.92 temperature 30 720 < th dose dependent rect. 23 15
92 192.08 temperature 30 14400 < th dose independent rect. 15 1
95 192.12 temperature 30 270 < th dose dependent rect. 17 21
105 192.22 temperature 30 270 < th dose dependent sin 0 NA
110 192.25 atmosphere 1015 30 < th dose dependent no NA NA
116 192.28 atmosphere 1015 30 < th dose dependent rect. 7 23
120 192.35 temperature 30 14400 > th dose independent rect. 15 1
124 192.37 atmosphere 995 30 > th dose dependent no NA NA
151 192.55 atmosphere 1015 90 < th dose dependent rect. 9 23
166 192.65 temperature 30 720 < th dose dependent rect. 3 10
192 192.83 temperature 30 1440 < th dose dependent rect. 8 3
228 193.03 temperature 30 270 < th dose dependent rect. 7 15
238 193.10 atmosphere 995 270 > th dose dependent rect. 2 23
243 193.14 temperature 20 14400 > th dose dependent rect. 20 1
246 193.14 atmosphere 1000 90 > th dose dependent rect. 4 23
249 193.17 temperature 25 4320 > th dose dependent rect. 11 1
251 193.17 atmosphere 1015 30 < th dose dependent rect. 23 23
253 193.19 temperature 20 14400 > th dose dependent rect. 8 1
256 193.20 atmosphere 1015 270 < th dose dependent rect. 20 23
260 193.22 temperature 30 270 < th dose dependent rect. 2 23
277 193.31 temperature 25 14400 > th dose dependent rect. 17 1
280 193.32 temperature 20 1440 > th dose dependent rect. 8 3
293 193.36 temperature 10 1440 > th dose dependent rect. 8 3
312 193.41 temperature 30 270 < th dose dependent rect. 7 7
337 193.51 temperature 30 270 < th dose dependent rect. 6 23
338 193.51 atmosphere 1010 10 < th dose dependent rect. 10 23
340 193.52 temperature 30 270 < th dose dependent rect. 4 23
344 193.54 temperature 25 14400 > th dose dependent rect. 13 5
346 193.55 temperature 20 270 > th dose dependent rect. 1 23
347 193.55 atmosphere 1000 90 > th dose dependent rect. 17 23
364 193.60 temperature 25 270 < th dose independent rect. 7 14
365 193.60 radiation 30 4320 > th dose independent rect. 15 18
371 193.60 atmosphere 995 270 > th dose dependent rect. 15 23
392 193.68 temperature 25 14400 > th dose dependent rect. 13 1
398 193.69 temperature 25 4320 > th dose dependent rect. 10 5
425 193.73 temperature 20 14400 > th dose dependent rect. 20 15
561 193.95 temperature 25 14400 > th dose dependent rect. 7 11
566 193.96 temperature 20 14400 > th dose dependent sin 8 NA
598 193.99 atmosphere 1015 30 < th dose dependent rect. 3 23
630 194.03 temperature 30 14400 < th dose independent rect. 14 19
642 194.04 temperature 25 14400 > th dose dependent sin 21 NA
782 194.16 temperature 30 14400 > th dose independent rect. 14 19
804 194.18 temperature 30 270 < th dose dependent rect. 20 23
805 194.19 temperature 25 14400 > th dose independent rect. 9 1
816 194.19 temperature 20 14400 > th dose dependent rect. 5 22
820 194.20 temperature 25 14400 < th dose independent rect. 17 4
823 194.20 temperature 20 14400 > th dose dependent no NA NA
832 194.20 temperature 20 14400 > th dose dependent rect. 6 20
837 194.20 temperature 20 14400 > th dose dependent rect. 1 23
880 194.22 temperature 20 270 > th dose dependent rect. 23 23
881 194.22 temperature 20 14400 > th dose dependent rect. 23 23
934 194.27 temperature 30 14400 < th dose independent rect. 14 12
948 194.28 temperature 30 14400 < th dose independent rect. 14 6
988 194.30 temperature 25 14400 > th dose independent rect. 17 4