Os03g0836000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Actin 7 (Actin 2).
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Os03g0836000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Actin 7 (Actin 2).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34.81 | 0.277 | 13.4 | 0.831 | 0.23 | -0.52 | 0.00564 | 6.47 | 0.651 | 0.434 | 29.9 | 4066 | -- | -- |
| 39.66 | 0.293 | 13.3 | 1.94 | 0.217 | 0.122 | -0.126 | -- | 0.8 | 0.915 | 23 | 16300 | -- | -- |
| 34.81 | 0.275 | 13.4 | 0.829 | 0.23 | -0.522 | -- | 6.48 | 0.651 | 0.445 | 29.92 | 4060 | -- | -- |
| 38.1 | 0.287 | 13.3 | 1.91 | 0.25 | 0.201 | -- | -- | 0.742 | 24 | 29.64 | 1549 | -- | -- |
| 38.05 | 0.287 | 13.4 | 0.829 | -- | -0.555 | -- | 6.56 | 0.649 | -- | 30 | 4005 | -- | -- |
| 39.9 | 0.296 | 13.3 | 1.86 | 0.214 | -- | -0.0448 | -- | 0.74 | 0.154 | -- | -- | -- | -- |
| 39.91 | 0.296 | 13.3 | 1.86 | 0.214 | -- | -- | -- | 0.74 | 0.0555 | -- | -- | -- | -- |
| 41.02 | 0.298 | 13.3 | 1.93 | -- | 0.217 | -- | -- | 0.705 | -- | 30.39 | 4462 | -- | -- |
| 78.73 | 0.413 | 13.5 | -- | 0.266 | -1.11 | -- | -- | 0.0988 | 22.8 | 24 | 47520 | -- | -- |
| 42.8 | 0.306 | 13.3 | 1.87 | -- | -- | -- | -- | 0.743 | -- | -- | -- | -- | -- |
| 131.27 | 0.536 | 13.4 | -- | 0.241 | -- | -- | -- | 0.533 | 0.491 | -- | -- | -- | -- |
| 59.27 | 0.359 | 13.4 | -- | -- | -1.39 | -- | -- | 0.21 | -- | 18.22 | 47520 | -- | -- |
| 134.9 | 0.542 | 13.4 | -- | -- | -- | -- | -- | 0.536 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 34.70 | temperature | 15 | 1440 | > th | dose independent | rect. | 10 | 8 |
| 2 | 34.73 | temperature | 15 | 270 | > th | dose independent | rect. | 18 | 8 |
| 3 | 34.77 | wind | 1 | 4320 | > th | dose independent | rect. | 4 | 1 |
| 6 | 34.85 | temperature | 30 | 4320 | < th | dose independent | sin | 7 | NA |
| 8 | 34.87 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 10 | 34.89 | temperature | 30 | 4320 | > th | dose independent | sin | 7 | NA |
| 15 | 34.93 | temperature | 30 | 4320 | < th | dose independent | rect. | 18 | 20 |
| 19 | 34.95 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 6 |
| 21 | 34.95 | temperature | 30 | 4320 | < th | dose independent | rect. | 5 | 9 |
| 26 | 34.96 | temperature | 30 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 29 | 34.96 | temperature | 30 | 4320 | < th | dose independent | rect. | 22 | 16 |
| 49 | 34.99 | temperature | 30 | 4320 | > th | dose independent | rect. | 18 | 20 |
| 52 | 35.00 | temperature | 30 | 4320 | > th | dose independent | rect. | 8 | 6 |
| 76 | 35.02 | temperature | 15 | 270 | > th | dose independent | rect. | 9 | 16 |
| 78 | 35.02 | humidity | 90 | 720 | > th | dose dependent | rect. | 12 | 7 |
| 118 | 35.07 | temperature | 30 | 4320 | > th | dose independent | rect. | 15 | 23 |
| 203 | 35.12 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 23 |
| 221 | 35.13 | temperature | 30 | 4320 | < th | dose independent | rect. | 5 | 14 |
| 282 | 35.13 | temperature | 30 | 4320 | < th | dose independent | rect. | 22 | 23 |
| 286 | 35.14 | temperature | 30 | 4320 | < th | dose independent | no | NA | NA |
| 387 | 35.16 | temperature | 30 | 4320 | > th | dose independent | rect. | 13 | 23 |
| 388 | 35.17 | temperature | 30 | 4320 | > th | dose independent | no | NA | NA |
| 389 | 35.17 | wind | 1 | 4320 | < th | dose independent | rect. | 4 | 1 |
| 544 | 35.19 | humidity | 90 | 720 | > th | dose dependent | rect. | 15 | 2 |
| 572 | 35.20 | temperature | 30 | 4320 | > th | dose dependent | rect. | 15 | 21 |
| 575 | 35.21 | temperature | 15 | 1440 | > th | dose independent | rect. | 10 | 15 |
| 625 | 35.24 | temperature | 30 | 4320 | > th | dose dependent | sin | 1 | NA |
| 631 | 35.24 | temperature | 30 | 4320 | > th | dose dependent | rect. | 9 | 7 |
| 632 | 35.24 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 7 |
| 669 | 35.25 | temperature | 30 | 4320 | > th | dose dependent | sin | 23 | NA |
| 671 | 35.25 | temperature | 30 | 4320 | > th | dose dependent | no | NA | NA |
| 834 | 35.26 | temperature | 30 | 4320 | > th | dose dependent | sin | 21 | NA |
| 861 | 35.27 | temperature | 30 | 4320 | > th | dose dependent | sin | 19 | NA |
| 892 | 35.28 | temperature | 30 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 919 | 35.29 | temperature | 15 | 270 | > th | dose independent | rect. | 19 | 18 |
| 956 | 35.31 | temperature | 15 | 1440 | > th | dose independent | rect. | 10 | 6 |
| 983 | 35.32 | temperature | 30 | 4320 | > th | dose dependent | rect. | 13 | 3 |