Os08g0128300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Actin-like protein 3 (Actin-related protein 3).
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Os08g0128300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Actin-like protein 3 (Actin-related protein 3).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.21 | 0.221 | 10.9 | 0.59 | 0.807 | 0.841 | -0.916 | -0.552 | 0.179 | 20.4 | 30.4 | 263 | -- | -- |
| 22.46 | 0.221 | 10.9 | 0.505 | 0.786 | 0.835 | -0.884 | -- | 0.154 | 20.3 | 29.8 | 212 | -- | -- |
| 24.73 | 0.232 | 10.9 | 0.605 | 0.769 | 0.841 | -- | -0.532 | 0.174 | 20.4 | 30.74 | 196 | -- | -- |
| 24.93 | 0.233 | 10.9 | 0.514 | 0.808 | 0.833 | -- | -- | 0.146 | 20.5 | 30.6 | 265 | -- | -- |
| 49.03 | 0.328 | 10.8 | 0.638 | -- | 0.867 | -- | -0.812 | 0.176 | -- | 30.74 | 196 | -- | -- |
| 31.78 | 0.264 | 10.9 | 0.288 | 0.716 | -- | -0.746 | -- | -0.00887 | 21.5 | -- | -- | -- | -- |
| 33.78 | 0.272 | 10.9 | 0.314 | 0.717 | -- | -- | -- | -0.00866 | 21.7 | -- | -- | -- | -- |
| 49.84 | 0.33 | 10.8 | 0.506 | -- | 0.858 | -- | -- | 0.141 | -- | 30.6 | 265 | -- | -- |
| 31.49 | 0.261 | 10.9 | -- | 0.782 | 0.646 | -- | -- | 0.0325 | 20.9 | 60.81 | 275 | -- | -- |
| 64.37 | 0.375 | 10.9 | 0.321 | -- | -- | -- | -- | -0.00956 | -- | -- | -- | -- | -- |
| 36.38 | 0.282 | 10.9 | -- | 0.718 | -- | -- | -- | -0.0436 | 21.8 | -- | -- | -- | -- |
| 56.03 | 0.349 | 10.9 | -- | -- | 0.707 | -- | -- | 0.0732 | -- | 29.73 | 2 | -- | -- |
| 67.08 | 0.382 | 10.9 | -- | -- | -- | -- | -- | -0.0451 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.16 | temperature | 10 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 6 | 21.95 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 23 |
| 7 | 22.00 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 23 |
| 8 | 22.02 | temperature | 30 | 270 | < th | dose dependent | rect. | 20 | 23 |
| 15 | 22.23 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 21 | 22.31 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 24 | 22.35 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 25 | 22.36 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 23 |
| 26 | 22.37 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 8 |
| 46 | 22.42 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 73 | 22.53 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 90 | 22.60 | temperature | 30 | 270 | < th | dose dependent | rect. | 17 | 23 |
| 93 | 22.61 | temperature | 10 | 720 | > th | dose dependent | rect. | 24 | 20 |
| 97 | 22.62 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 98 | 22.63 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 5 |
| 101 | 22.64 | temperature | 25 | 1440 | < th | dose dependent | sin | 13 | NA |
| 108 | 22.65 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 117 | 22.66 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 125 | 22.67 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 164 | 22.71 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 1 |
| 275 | 22.82 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 282 | 22.82 | temperature | 10 | 720 | > th | dose dependent | rect. | 24 | 15 |
| 326 | 22.86 | temperature | 15 | 270 | > th | dose dependent | rect. | 8 | 14 |
| 365 | 22.89 | temperature | 15 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 472 | 23.00 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 18 |
| 478 | 23.01 | temperature | 10 | 1440 | > th | dose dependent | sin | 12 | NA |
| 496 | 23.01 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 537 | 23.04 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 15 |
| 574 | 23.07 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 11 |
| 672 | 23.13 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 8 |
| 782 | 23.20 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 815 | 23.21 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 845 | 23.23 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 2 |
| 847 | 23.23 | temperature | 10 | 720 | > th | dose dependent | sin | 3 | NA |
| 866 | 23.24 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 915 | 23.25 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 23 |
| 918 | 23.26 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 4 |
| 940 | 23.26 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 23 |
| 965 | 23.28 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 1 |