BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0128300 Os08g0128300|AK103383
(180 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0128300 Similar to Actin-like protein 3 (Actin-related... 376 e-105
Os02g0596900 Actin/actin-like family protein 256 6e-69
AK059967 125 2e-29
Os05g0106600 Similar to Actin 97 123 7e-29
Os01g0964400 Similar to Actin 7 (Actin 2) 123 7e-29
Os11g0163100 Similar to Actin 7 (Actin 2) 123 7e-29
Os03g0836000 Similar to Actin 7 (Actin 2) 122 1e-28
Os10g0510000 actin [Oryza sativa (japonica cultivar-group)] 122 1e-28
Os03g0718100 Actin 1 122 1e-28
Os05g0438800 Similar to Actin 1 119 9e-28
Os01g0866100 Similar to Actin 4 114 6e-26
Os12g0163700 Similar to Actin 7 (Actin 2) 97 6e-21
Os12g0641000 Similar to Actin 1 96 1e-20
Os08g0369300 Similar to ARP2 (Actin-related protein 2) 84 8e-17
Os08g0137200 Actin/actin-like family protein 76 1e-14
>Os08g0128300 Similar to Actin-like protein 3 (Actin-related protein 3)
Length = 180
Score = 376 bits (965), Expect = e-105, Method: Compositional matrix adjust.
Identities = 180/180 (100%), Positives = 180/180 (100%)
Query: 1 MDAATRPAVVIDNGTGYSKLGFSGNSEPCFTIPTVVAVNESFLDQSEMCSSANWIAQYNA 60
MDAATRPAVVIDNGTGYSKLGFSGNSEPCFTIPTVVAVNESFLDQSEMCSSANWIAQYNA
Sbjct: 1 MDAATRPAVVIDNGTGYSKLGFSGNSEPCFTIPTVVAVNESFLDQSEMCSSANWIAQYNA 60
Query: 61 GVMADLDFFIGDEALSLFKSSGLYTRKHPINHGQVDDWDTMERFWQQCIFNYLRCNPEEH 120
GVMADLDFFIGDEALSLFKSSGLYTRKHPINHGQVDDWDTMERFWQQCIFNYLRCNPEEH
Sbjct: 61 GVMADLDFFIGDEALSLFKSSGLYTRKHPINHGQVDDWDTMERFWQQCIFNYLRCNPEEH 120
Query: 121 YFLLTDSPVSTPESRECAGEIMFETFNVPGLYISVQSVLSLSAGYAFLKSISDEDSVSVV 180
YFLLTDSPVSTPESRECAGEIMFETFNVPGLYISVQSVLSLSAGYAFLKSISDEDSVSVV
Sbjct: 121 YFLLTDSPVSTPESRECAGEIMFETFNVPGLYISVQSVLSLSAGYAFLKSISDEDSVSVV 180
>Os02g0596900 Actin/actin-like family protein
Length = 428
Score = 256 bits (654), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 115/170 (67%), Positives = 144/170 (84%), Gaps = 1/170 (0%)
Query: 1 MDAATRPAVVIDNGTGYSKLGFSGNSEPCFTIPTVVAVNESFLDQSEM-CSSANWIAQYN 59
MDAA+RPAVVIDNGTGY+K+GF+GN EPCF PTVVAVN++F Q+ + NW+AQ++
Sbjct: 1 MDAASRPAVVIDNGTGYTKMGFAGNVEPCFITPTVVAVNDTFAGQTRANTTKGNWMAQHS 60
Query: 60 AGVMADLDFFIGDEALSLFKSSGLYTRKHPINHGQVDDWDTMERFWQQCIFNYLRCNPEE 119
AGVMADLDFFIG++AL+ +SS Y +PI++GQV++WDTMERFWQQCIFNYLRC+PE+
Sbjct: 61 AGVMADLDFFIGEDALARSRSSNTYNLSYPIHNGQVENWDTMERFWQQCIFNYLRCDPED 120
Query: 120 HYFLLTDSPVSTPESRECAGEIMFETFNVPGLYISVQSVLSLSAGYAFLK 169
HYFLLT+SP++ PE+RE GEIMFETFNVPGLYI+ Q VL+L+AGY K
Sbjct: 121 HYFLLTESPLTPPETREYTGEIMFETFNVPGLYIACQPVLALAAGYTTTK 170
>AK059967
Length = 375
Score = 125 bits (314), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/159 (40%), Positives = 90/159 (56%), Gaps = 24/159 (15%)
Query: 8 AVVIDNGTGYSKLGFSGNSEPCFTIPTVVAVNESFLDQSEMCSSANWIAQYNAGVMADL- 66
A+VIDNGTG K GF+G+ P P++V + GVM +
Sbjct: 7 ALVIDNGTGMCKAGFAGDDAPRAVFPSIVG------------------RPRHTGVMVGMG 48
Query: 67 --DFFIGDEALSLFKSSGLYTRKHPINHGQVDDWDTMERFWQQCIFNYLRCNPEEHYFLL 124
D ++GDEA S G+ T K+PI HG V +WD ME+ W +N LR PEEH LL
Sbjct: 49 QKDSYVGDEAQS---KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 105
Query: 125 TDSPVSTPESRECAGEIMFETFNVPGLYISVQSVLSLSA 163
T++P++ +RE +IMFETFN P +Y+++Q+VLSL A
Sbjct: 106 TEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYA 144
>Os05g0106600 Similar to Actin 97
Length = 377
Score = 123 bits (309), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 89/158 (56%), Gaps = 24/158 (15%)
Query: 9 VVIDNGTGYSKLGFSGNSEPCFTIPTVVAVNESFLDQSEMCSSANWIAQYNAGVMADL-- 66
+V DNGTG K GF+G+ P P++V + GVM +
Sbjct: 10 LVCDNGTGMVKAGFAGDDAPRAVFPSIVG------------------RPRHTGVMVGMGQ 51
Query: 67 -DFFIGDEALSLFKSSGLYTRKHPINHGQVDDWDTMERFWQQCIFNYLRCNPEEHYFLLT 125
D ++GDEA S G+ T K+PI HG V +WD ME+ W +N LR PEEH LLT
Sbjct: 52 KDAYVGDEAQS---KRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLT 108
Query: 126 DSPVSTPESRECAGEIMFETFNVPGLYISVQSVLSLSA 163
++P++ +RE +IMFETFNVP +Y+++Q+VLSL A
Sbjct: 109 EAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYA 146
>Os01g0964400 Similar to Actin 7 (Actin 2)
Length = 222
Score = 123 bits (309), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 89/158 (56%), Gaps = 24/158 (15%)
Query: 9 VVIDNGTGYSKLGFSGNSEPCFTIPTVVAVNESFLDQSEMCSSANWIAQYNAGVMADL-- 66
+V DNGTG K GF+G+ P P++V + GVM +
Sbjct: 10 LVCDNGTGMVKAGFAGDDAPRAVFPSIVG------------------RPRHTGVMVGMGQ 51
Query: 67 -DFFIGDEALSLFKSSGLYTRKHPINHGQVDDWDTMERFWQQCIFNYLRCNPEEHYFLLT 125
D ++GDEA S G+ T K+PI HG V +WD ME+ W +N LR PEEH LLT
Sbjct: 52 KDAYVGDEAQS---KRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLT 108
Query: 126 DSPVSTPESRECAGEIMFETFNVPGLYISVQSVLSLSA 163
++P++ +RE +IMFETFNVP +Y+++Q+VLSL A
Sbjct: 109 EAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYA 146
>Os11g0163100 Similar to Actin 7 (Actin 2)
Length = 377
Score = 123 bits (308), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 89/158 (56%), Gaps = 24/158 (15%)
Query: 9 VVIDNGTGYSKLGFSGNSEPCFTIPTVVAVNESFLDQSEMCSSANWIAQYNAGVMADL-- 66
+V DNGTG K GF+G+ P P++V + GVM +
Sbjct: 10 LVCDNGTGMVKAGFAGDDAPRAVFPSIVG------------------RPRHTGVMVGMGQ 51
Query: 67 -DFFIGDEALSLFKSSGLYTRKHPINHGQVDDWDTMERFWQQCIFNYLRCNPEEHYFLLT 125
D ++GDEA S G+ T K+PI HG V +WD ME+ W +N LR PEEH LLT
Sbjct: 52 KDAYVGDEAQS---KRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLT 108
Query: 126 DSPVSTPESRECAGEIMFETFNVPGLYISVQSVLSLSA 163
++P++ +RE +IMFETFNVP +Y+++Q+VLSL A
Sbjct: 109 EAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYA 146
>Os03g0836000 Similar to Actin 7 (Actin 2)
Length = 377
Score = 122 bits (306), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/158 (39%), Positives = 89/158 (56%), Gaps = 24/158 (15%)
Query: 9 VVIDNGTGYSKLGFSGNSEPCFTIPTVVAVNESFLDQSEMCSSANWIAQYNAGVMADL-- 66
+V DNGTG K GF+G+ P P++V + GVM +
Sbjct: 10 LVCDNGTGMVKAGFAGDDAPRAVFPSIVG------------------RPRHTGVMVGMGQ 51
Query: 67 -DFFIGDEALSLFKSSGLYTRKHPINHGQVDDWDTMERFWQQCIFNYLRCNPEEHYFLLT 125
D ++GDEA S G+ T K+PI HG V++WD ME+ W +N LR PEEH LLT
Sbjct: 52 KDAYVGDEAQS---KRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPILLT 108
Query: 126 DSPVSTPESRECAGEIMFETFNVPGLYISVQSVLSLSA 163
++P++ +RE +IMFETFN P +Y+++Q+VLSL A
Sbjct: 109 EAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYA 146
>Os10g0510000 actin [Oryza sativa (japonica cultivar-group)]
Length = 377
Score = 122 bits (306), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/165 (39%), Positives = 91/165 (55%), Gaps = 24/165 (14%)
Query: 2 DAATRPAVVIDNGTGYSKLGFSGNSEPCFTIPTVVAVNESFLDQSEMCSSANWIAQYNAG 61
DA +V DNGTG K GF+G+ P P++V + G
Sbjct: 3 DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVG------------------RPRHTG 44
Query: 62 VMADL---DFFIGDEALSLFKSSGLYTRKHPINHGQVDDWDTMERFWQQCIFNYLRCNPE 118
VM + D ++GDEA S G+ T K+PI HG V +WD ME+ W +N LR PE
Sbjct: 45 VMVGMGQKDAYVGDEAQS---KRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPE 101
Query: 119 EHYFLLTDSPVSTPESRECAGEIMFETFNVPGLYISVQSVLSLSA 163
EH LLT++P++ +RE +IMFETF+VP +Y+++Q+VLSL A
Sbjct: 102 EHPILLTEAPLNPKANREKMTQIMFETFSVPAMYVAIQAVLSLYA 146
>Os03g0718100 Actin 1
Length = 377
Score = 122 bits (306), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/165 (39%), Positives = 90/165 (54%), Gaps = 24/165 (14%)
Query: 2 DAATRPAVVIDNGTGYSKLGFSGNSEPCFTIPTVVAVNESFLDQSEMCSSANWIAQYNAG 61
DA +V DNGTG K GF+G+ P P++V + G
Sbjct: 3 DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR------------------HTG 44
Query: 62 VMADL---DFFIGDEALSLFKSSGLYTRKHPINHGQVDDWDTMERFWQQCIFNYLRCNPE 118
VM + D ++GDEA S G+ T K+PI HG V +WD ME+ W +N LR PE
Sbjct: 45 VMVGMGQKDAYVGDEAQS---KRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPE 101
Query: 119 EHYFLLTDSPVSTPESRECAGEIMFETFNVPGLYISVQSVLSLSA 163
EH LLT++P++ +RE +IMFETFN P +Y+++Q+VLSL A
Sbjct: 102 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYA 146
>Os05g0438800 Similar to Actin 1
Length = 376
Score = 119 bits (299), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 89/158 (56%), Gaps = 24/158 (15%)
Query: 9 VVIDNGTGYSKLGFSGNSEPCFTIPTVVAVNESFLDQSEMCSSANWIAQYNAGVMADL-- 66
+V DNGTG K GF+G+ P P++V + GVM +
Sbjct: 9 IVCDNGTGMVKAGFAGDDAPRAVFPSIVG------------------RPRHTGVMVGMGQ 50
Query: 67 -DFFIGDEALSLFKSSGLYTRKHPINHGQVDDWDTMERFWQQCIFNYLRCNPEEHYFLLT 125
D ++GDEA + G+ T K+PI HG V++WD ME+ W +N LR PE+H LLT
Sbjct: 51 KDAYVGDEAQA---KRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEDHPVLLT 107
Query: 126 DSPVSTPESRECAGEIMFETFNVPGLYISVQSVLSLSA 163
++P++ +RE +IMFETFN P +Y+++Q+VLSL A
Sbjct: 108 EAPLNPKANREKMTQIMFETFNCPAMYVAIQAVLSLYA 145
>Os01g0866100 Similar to Actin 4
Length = 203
Score = 114 bits (284), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 86/155 (55%), Gaps = 24/155 (15%)
Query: 9 VVIDNGTGYSKLGFSGNSEPCFTIPTVVAVNESFLDQSEMCSSANWIAQYNAGVMADL-- 66
+V DNGTG K GF+G+ P P++V + GVM +
Sbjct: 9 IVCDNGTGMVKAGFAGDDAPRAVFPSIVG------------------RPRHTGVMVGMGQ 50
Query: 67 -DFFIGDEALSLFKSSGLYTRKHPINHGQVDDWDTMERFWQQCIFNYLRCNPEEHYFLLT 125
D ++GDEA S G+ T K+PI HG V++WD ME+ W +N LR PEEH LLT
Sbjct: 51 KDAYVGDEAQS---KRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLT 107
Query: 126 DSPVSTPESRECAGEIMFETFNVPGLYISVQSVLS 160
++P++ +RE +IMFETFN P +Y+++Q++ S
Sbjct: 108 EAPMNPKANREKMTQIMFETFNCPAMYVAIQTMAS 142
>Os12g0163700 Similar to Actin 7 (Actin 2)
Length = 363
Score = 97.1 bits (240), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 77/158 (48%), Gaps = 41/158 (25%)
Query: 9 VVIDNGTGYSKLGFSGNSEPCFTIPTVVAVNESFLDQSEMCSSANWIAQYNAGVMADL-- 66
+V DNGTG K GF+G+ P P++V + GVM +
Sbjct: 10 LVCDNGTGMVKAGFAGDDAPRAVFPSIVG------------------RPRHTGVMVGMGQ 51
Query: 67 -DFFIGDEALSLFKSSGLYTRKHPINHGQVDDWDTMERFWQQCIFNYLRCNPEEHYFLLT 125
D ++GDEA S G+ T K+PI HG V +WD ME+ W +N LR PEE
Sbjct: 52 KDAYVGDEAQS---KRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEKMT--- 105
Query: 126 DSPVSTPESRECAGEIMFETFNVPGLYISVQSVLSLSA 163
+IMFE+FNVP +Y+++Q+VLSL A
Sbjct: 106 --------------QIMFESFNVPAMYVAIQAVLSLYA 129
>Os12g0641000 Similar to Actin 1
Length = 243
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 56/79 (70%)
Query: 85 TRKHPINHGQVDDWDTMERFWQQCIFNYLRCNPEEHYFLLTDSPVSTPESRECAGEIMFE 144
T K+PI HG V++WD ME+ W +N LR PEEH LLT++P++ +RE +IMFE
Sbjct: 1 TLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 60
Query: 145 TFNVPGLYISVQSVLSLSA 163
TFN P +Y+++Q+VLSL A
Sbjct: 61 TFNAPAMYVAIQAVLSLYA 79
>Os08g0369300 Similar to ARP2 (Actin-related protein 2)
Length = 441
Score = 83.6 bits (205), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 74/160 (46%), Gaps = 24/160 (15%)
Query: 8 AVVIDNGTGYSKLGFSGNSEPCFTIPTVVAVN----ESFLDQSEMCSSANWIAQYNAGVM 63
VV DNGTGY K GF+G + P P VV E L + E+
Sbjct: 6 VVVCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLQEQELT-------------- 51
Query: 64 ADLDFFIGDEALSLFKSSGLYTRKHPINHGQVDDWDTMERFWQQCIFNYLRCNPEEHYFL 123
D +G L + +P+ +G V WD M W ++ L+ +P E L
Sbjct: 52 ---DIVVGAACADLRHQLDV---SYPVTNGIVQSWDDMGHIWDHAFYSELKVDPSECKIL 105
Query: 124 LTDSPVSTPESRECAGEIMFETFNVPGLYISVQSVLSLSA 163
LTD P++ ++RE E MFE +N G++I VQ+VLSL A
Sbjct: 106 LTDPPLNPVKNREKMIETMFEKYNFAGVFIQVQAVLSLYA 145
>Os08g0137200 Actin/actin-like family protein
Length = 443
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 79/167 (47%), Gaps = 8/167 (4%)
Query: 8 AVVIDNGTGYSKLGFSGNSEPCFTIPTVVAVNESFLDQSEMCSSANWIAQYNAGVMAD-L 66
A+VID G+ K G++G+ P P+VV E + E + A ++ A +
Sbjct: 9 AIVIDVGSYSCKAGYAGDDTPKAVFPSVVGSIEQTGETDEAKADKEAEAASDSKNGAKPM 68
Query: 67 DFFIGDEALSLFKSSGL-YTRKH-----PINHGQVDDWDTMERFWQQCIFNYLRCNPEEH 120
D L+ L + R H P+ G V DWD ++ W L NPEEH
Sbjct: 69 DVDKAKTKRKLYVGQELEFRRDHMEVISPMKDGTVTDWDIVDNIWNHAFRQRLLINPEEH 128
Query: 121 YFLLTDSPVSTPESRECAGEIMFETFNVPGLYISVQSVL-SLSAGYA 166
L+ + +T + RE A E+MFE + VP L+++ +VL S ++G A
Sbjct: 129 PMLIAEPSTNTGQQREKAAELMFEKYKVPALFLAKNAVLTSFASGRA 175
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.134 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,250,834
Number of extensions: 240816
Number of successful extensions: 421
Number of sequences better than 1.0e-10: 15
Number of HSP's gapped: 408
Number of HSP's successfully gapped: 15
Length of query: 180
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 86
Effective length of database: 12,127,685
Effective search space: 1042980910
Effective search space used: 1042980910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 153 (63.5 bits)