Os02g0596900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Actin/actin-like family protein.
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Os02g0596900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Actin/actin-like family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41.34 | 0.302 | 9.3 | 0.0651 | 0.351 | -1.35 | 0.716 | 2.09 | -0.119 | 8.3 | 18.91 | 663 | -- | -- |
| 43.27 | 0.306 | 9.35 | -0.334 | 0.357 | -1.53 | 0.311 | -- | -0.241 | 8.95 | 15.36 | 577 | -- | -- |
| 42.24 | 0.303 | 9.32 | -0.0277 | 0.381 | -1.37 | -- | 1.85 | -0.144 | 9.61 | 18.54 | 510 | -- | -- |
| 43.01 | 0.305 | 9.35 | -0.336 | 0.366 | -1.46 | -- | -- | -0.232 | 9.78 | 16.68 | 532 | -- | -- |
| 47.37 | 0.321 | 9.32 | -0.00162 | -- | -1.7 | -- | 1.35 | -0.113 | -- | 17.39 | 621 | -- | -- |
| 72.44 | 0.399 | 9.39 | -0.713 | 0.745 | -- | 0.484 | -- | -0.469 | 8.19 | -- | -- | -- | -- |
| 73.15 | 0.401 | 9.39 | -0.699 | 0.744 | -- | -- | -- | -0.469 | 8.23 | -- | -- | -- | -- |
| 48.81 | 0.325 | 9.35 | -0.267 | -- | -1.69 | -- | -- | -0.178 | -- | 16.89 | 617 | -- | -- |
| 45.64 | 0.315 | 9.34 | -- | 0.322 | -1.62 | -- | -- | -0.172 | 9.92 | 16.4 | 560 | -- | -- |
| 103.69 | 0.476 | 9.41 | -0.693 | -- | -- | -- | -- | -0.461 | -- | -- | -- | -- | -- |
| 86.02 | 0.434 | 9.38 | -- | 0.74 | -- | -- | -- | -0.391 | 8.3 | -- | -- | -- | -- |
| 50.43 | 0.331 | 9.34 | -- | -- | -1.81 | -- | -- | -0.143 | -- | 16.5 | 622 | -- | -- |
| 116.37 | 0.504 | 9.4 | -- | -- | -- | -- | -- | -0.384 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.81 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 20 |
| 3 | 40.18 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 20 |
| 14 | 40.66 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 23 | 40.85 | temperature | 15 | 1440 | > th | dose dependent | rect. | 19 | 11 |
| 31 | 40.95 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 9 |
| 32 | 40.95 | temperature | 30 | 1440 | < th | dose dependent | rect. | 19 | 11 |
| 41 | 40.98 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 135 | 41.33 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 4 |
| 265 | 41.73 | temperature | 15 | 1440 | > th | dose dependent | sin | 11 | NA |
| 291 | 41.79 | temperature | 25 | 1440 | < th | dose dependent | sin | 11 | NA |
| 382 | 42.02 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 23 |
| 401 | 42.07 | temperature | 20 | 720 | > th | dose dependent | rect. | 20 | 23 |
| 468 | 42.25 | temperature | 20 | 720 | > th | dose dependent | no | NA | NA |
| 824 | 43.01 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 23 |
| 856 | 43.05 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 23 |
| 871 | 43.08 | temperature | 30 | 720 | < th | dose dependent | rect. | 12 | 23 |
| 896 | 43.13 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 23 |
| 920 | 43.20 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |