BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0260100 Os01g0260100|AK070313
(196 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0260100 Similar to Kinesin heavy chain (Fragment) 410 e-115
Os05g0521300 Similar to Kinesin heavy chain (Fragment) 116 1e-26
Os02g0229600 Calponin-like actin-binding domain containing ... 112 1e-25
Os01g0744000 Similar to Kinesin heavy chain (Fragment) 109 1e-24
Os12g0547500 Calponin-like actin-binding domain containing ... 108 2e-24
Os07g0105700 Similar to Kinesin heavy chain (Fragment) 106 8e-24
Os04g0666900 Similar to Kinesin-like calmodulin-binding pro... 106 1e-23
Os04g0629700 Similar to Kinesin-1 (Kinesin-like protein A) 105 2e-23
Os05g0397900 Kinesin, motor region domain containing protein 103 5e-23
Os03g0862200 Similar to Kinesin heavy chain (Fragment) 103 9e-23
Os03g0114000 Similar to Kinesin 78 3e-15
Os05g0117798 Kinesin, motor region domain containing protein 72 3e-13
Os08g0558400 Similar to Kinesin heavy chain (Fragment) 68 5e-12
Os02g0489800 Kinesin, motor region domain containing protein 67 6e-12
>Os01g0260100 Similar to Kinesin heavy chain (Fragment)
Length = 196
Score = 410 bits (1055), Expect = e-115, Method: Compositional matrix adjust.
Identities = 196/196 (100%), Positives = 196/196 (100%)
Query: 1 MDVQPARTMRNLPDTLSSLMGFNKHLTPSWIESVSHIIDGLSPTKPQMKVMVEKDENISD 60
MDVQPARTMRNLPDTLSSLMGFNKHLTPSWIESVSHIIDGLSPTKPQMKVMVEKDENISD
Sbjct: 1 MDVQPARTMRNLPDTLSSLMGFNKHLTPSWIESVSHIIDGLSPTKPQMKVMVEKDENISD 60
Query: 61 DNTESEAKVQKIQDELVSLNAQLKQITLQRREALNNYLDLKGNIRVFCRIRPFHHEESYS 120
DNTESEAKVQKIQDELVSLNAQLKQITLQRREALNNYLDLKGNIRVFCRIRPFHHEESYS
Sbjct: 61 DNTESEAKVQKIQDELVSLNAQLKQITLQRREALNNYLDLKGNIRVFCRIRPFHHEESYS 120
Query: 121 SRNLFTLDESNVFLKVAETKRKQYKFDKVFDQFSTQGDVFSEVEPVIKSALDGYNVCIFA 180
SRNLFTLDESNVFLKVAETKRKQYKFDKVFDQFSTQGDVFSEVEPVIKSALDGYNVCIFA
Sbjct: 121 SRNLFTLDESNVFLKVAETKRKQYKFDKVFDQFSTQGDVFSEVEPVIKSALDGYNVCIFA 180
Query: 181 YGQTGSGKTYTMSITI 196
YGQTGSGKTYTMSITI
Sbjct: 181 YGQTGSGKTYTMSITI 196
>Os05g0521300 Similar to Kinesin heavy chain (Fragment)
Length = 926
Score = 116 bits (290), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/138 (41%), Positives = 87/138 (63%), Gaps = 15/138 (10%)
Query: 71 KIQDELVSLNAQLK----------QITLQRREALNNYLDLKGNIRVFCRIRPFHHEESYS 120
+++DE+ + + LK ++ + ++ N +LKGNIRV+CR+RPF +
Sbjct: 349 ELRDEMSNFGSGLKCLVDAAENYHKVLAENQKLFNEVQELKGNIRVYCRVRPFLPGQDKK 408
Query: 121 SRNLFTLDESNVFL-----KVAETKRKQYKFDKVFDQFSTQGDVFSEVEPVIKSALDGYN 175
S + + E+ L K + + +KF+KVF FS+Q +VFS+++P+I+S LDG+N
Sbjct: 409 STTVDYIGENGELLISNPFKQGKDGHRMFKFNKVFSPFSSQAEVFSDIQPLIRSVLDGFN 468
Query: 176 VCIFAYGQTGSGKTYTMS 193
VCIFAYGQTGSGKTYTMS
Sbjct: 469 VCIFAYGQTGSGKTYTMS 486
>Os02g0229600 Calponin-like actin-binding domain containing protein
Length = 997
Score = 112 bits (281), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/137 (45%), Positives = 80/137 (58%), Gaps = 15/137 (10%)
Query: 71 KIQDELVSLNAQLKQIT----------LQRREALNNYLDLKGNIRVFCRIRPFH-HEESY 119
K +EL L LK +T + R+ N +LKGNIRV+CRIRPF E+
Sbjct: 793 KWSEELAGLGKSLKVVTNTAEKYHGALAENRKLFNEIQELKGNIRVYCRIRPFRPGEDDK 852
Query: 120 SSRNLFTLDESNVFL----KVAETKRKQYKFDKVFDQFSTQGDVFSEVEPVIKSALDGYN 175
SS + D + L K + K + F+KVF +TQ VF +++P+I+S LDGYN
Sbjct: 853 SSSVEYIGDNGELVLSNPTKQGKEGGKNFTFNKVFGPITTQDAVFKDIQPLIRSVLDGYN 912
Query: 176 VCIFAYGQTGSGKTYTM 192
VCIFAYGQTGSGKTYTM
Sbjct: 913 VCIFAYGQTGSGKTYTM 929
>Os01g0744000 Similar to Kinesin heavy chain (Fragment)
Length = 971
Score = 109 bits (272), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 78/123 (63%), Gaps = 5/123 (4%)
Query: 76 LVSLNAQLKQITLQRREALNNYLDLKGNIRVFCRIRPFHHEESYSSRNLFTLDESNVFLK 135
LV ++ + ++ N +LKGNIRV+CR+RPF + + + E+ L
Sbjct: 445 LVDAAENYHKVLAENQKLFNEVQELKGNIRVYCRVRPFLPGQDGKLTAIDYIGENGEILI 504
Query: 136 VAETKR-----KQYKFDKVFDQFSTQGDVFSEVEPVIKSALDGYNVCIFAYGQTGSGKTY 190
+K+ + +KF+KVF S+Q +VFS+++P+I+S LDG+NVCIFAYGQTGSGKTY
Sbjct: 505 ANPSKQGKEGYRMFKFNKVFGTHSSQAEVFSDIQPLIRSVLDGFNVCIFAYGQTGSGKTY 564
Query: 191 TMS 193
TMS
Sbjct: 565 TMS 567
>Os12g0547500 Calponin-like actin-binding domain containing protein
Length = 954
Score = 108 bits (270), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 52/109 (47%), Positives = 73/109 (66%), Gaps = 4/109 (3%)
Query: 89 QRREALNNYLDLKGNIRVFCRIRPFHHEESYSSRNLFTLDESNVFL----KVAETKRKQY 144
+ R+ N DLKGNIRV+CR+RPF S ++ +E + + K + K +
Sbjct: 360 ENRKLYNQIQDLKGNIRVYCRVRPFLPGHRSLSSSVADTEERTITIITPTKYGKDGCKSF 419
Query: 145 KFDKVFDQFSTQGDVFSEVEPVIKSALDGYNVCIFAYGQTGSGKTYTMS 193
F++VF STQ +VFS+++P+I+S LDG+NVCIFAYGQTGSGKT+TMS
Sbjct: 420 SFNRVFGPASTQEEVFSDMQPLIRSVLDGFNVCIFAYGQTGSGKTFTMS 468
>Os07g0105700 Similar to Kinesin heavy chain (Fragment)
Length = 394
Score = 106 bits (265), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 55/106 (51%), Positives = 69/106 (65%), Gaps = 5/106 (4%)
Query: 90 RREALNNYLDLKGNIRVFCRIRPFHHEESYSSRNLFTLDESNVFLKVAETKRKQ---YKF 146
R+ N L+LKGNIRVFCR+RP ES + + N+ + T Q + F
Sbjct: 35 RKRLHNTILELKGNIRVFCRVRPLLPNESGAV--AYPKSGENLGRGIELTHNAQMYSFTF 92
Query: 147 DKVFDQFSTQGDVFSEVEPVIKSALDGYNVCIFAYGQTGSGKTYTM 192
DKVF+Q ++Q DVF E+ +I+SALDGY VCIFAYGQTGSGKTYTM
Sbjct: 93 DKVFEQSASQEDVFIEISQLIQSALDGYKVCIFAYGQTGSGKTYTM 138
>Os04g0666900 Similar to Kinesin-like calmodulin-binding protein-like protein
(Fragment)
Length = 1226
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/157 (36%), Positives = 95/157 (60%), Gaps = 2/157 (1%)
Query: 38 IDGLSPTKPQMKVMVEKDENISDDNTESEAKVQKIQDELVSLNAQLKQITLQRREALNNY 97
+D L + ++ + E ++ N ++ +++ +L+ L KQ + R+ N
Sbjct: 785 VDTLQNSLKELDELREFKADVDRKNQQTAEILKRQGAQLIELENLYKQEQVLRKRYYNTI 844
Query: 98 LDLKGNIRVFCRIRPFHHEESYSS-RNLF-TLDESNVFLKVAETKRKQYKFDKVFDQFST 155
D+KG IRVFCR+RP + +E +N+ + DE V + K KQ+ +D+VFD +T
Sbjct: 845 EDMKGKIRVFCRLRPLNDKELIEKDKNIVCSPDEFTVAHPWKDDKSKQHIYDRVFDANTT 904
Query: 156 QGDVFSEVEPVIKSALDGYNVCIFAYGQTGSGKTYTM 192
Q +VF + + +++SA+DGYNVCIFAYGQTGSGKT+T+
Sbjct: 905 QEEVFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTI 941
>Os04g0629700 Similar to Kinesin-1 (Kinesin-like protein A)
Length = 788
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/131 (41%), Positives = 78/131 (59%), Gaps = 7/131 (5%)
Query: 69 VQKIQDELVSLNAQLKQITLQRREALNNYLDLKGNIRVFCRIRPFHH-------EESYSS 121
++ +++ L S Q+ + R++ N L+LKGNIRVFCR+RP EE+ S
Sbjct: 398 IKDLEERLASAEFQIVEADKLRKKLHNTILELKGNIRVFCRVRPLLQDNDSSGAEEALIS 457
Query: 122 RNLFTLDESNVFLKVAETKRKQYKFDKVFDQFSTQGDVFSEVEPVIKSALDGYNVCIFAY 181
+ + +R + +DKVFD ++Q DVF E+ +++SALDGY VCIFAY
Sbjct: 458 YPTSVESAGRGIDLMNQGQRFSFSYDKVFDHGASQEDVFVEMSQLVQSALDGYKVCIFAY 517
Query: 182 GQTGSGKTYTM 192
GQTGSGKTYTM
Sbjct: 518 GQTGSGKTYTM 528
>Os05g0397900 Kinesin, motor region domain containing protein
Length = 840
Score = 103 bits (258), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 69/108 (63%), Gaps = 4/108 (3%)
Query: 89 QRREALNNYLDLKGNIRVFCRIRPFHHEE-SYSSRNLFTLD---ESNVFLKVAETKRKQY 144
+RR N ++L+GNIRVFCR RP E S ++ +D E+ + ++ RK +
Sbjct: 163 ERRRLYNELIELRGNIRVFCRCRPLSTAEISNGCSSIVQIDPSHETELQFVPSDKDRKAF 222
Query: 145 KFDKVFDQFSTQGDVFSEVEPVIKSALDGYNVCIFAYGQTGSGKTYTM 192
KFD VF Q VF+E PV++S +DG+NVCIFAYGQTG+GKT+TM
Sbjct: 223 KFDHVFGPSDNQETVFAESLPVVRSVMDGFNVCIFAYGQTGTGKTFTM 270
>Os03g0862200 Similar to Kinesin heavy chain (Fragment)
Length = 440
Score = 103 bits (256), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 52/98 (53%), Positives = 66/98 (67%), Gaps = 5/98 (5%)
Query: 98 LDLKGNIRVFCRIRPFHHEESYSSRNLFTLDESNVFLKVAETKRKQ---YKFDKVFDQFS 154
L+LKGNIRVFCR+RP ES + + N+ + T Q + FDKVF+Q +
Sbjct: 89 LELKGNIRVFCRVRPLLPNESGAV--AYPKSGENLGRGIELTHNGQMYFFTFDKVFEQST 146
Query: 155 TQGDVFSEVEPVIKSALDGYNVCIFAYGQTGSGKTYTM 192
+Q DVF E+ +++SALDGY VCIFAYGQTGSGKTYTM
Sbjct: 147 SQEDVFIEISHLVQSALDGYKVCIFAYGQTGSGKTYTM 184
>Os03g0114000 Similar to Kinesin
Length = 637
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 42/55 (76%)
Query: 141 RKQYKFDKVFDQFSTQGDVFSEVEPVIKSALDGYNVCIFAYGQTGSGKTYTMSIT 195
+K +KFD+V+ Q DV+++ P++ S LDGYNVCIFAYGQTG+GKT+TM T
Sbjct: 27 KKTFKFDRVYMPTDNQADVYADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGT 81
>Os05g0117798 Kinesin, motor region domain containing protein
Length = 1056
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 55/105 (52%), Gaps = 23/105 (21%)
Query: 103 NIRVFCRIRPFHHEESYSSRNLFTLDESNVFLKVAETKR--------------KQYKFDK 148
N++V R RP EE+ S+ + V + E +R + + FDK
Sbjct: 49 NVQVILRCRPMSDEETKSN--------TPVVISCNERRREVAATQIIANKQIDRTFAFDK 100
Query: 149 VFDQFSTQGDVFSE-VEPVIKSALDGYNVCIFAYGQTGSGKTYTM 192
VF S Q D+F + + P++ L+GYN IFAYGQTG+GKTYTM
Sbjct: 101 VFGPASKQKDLFEQSISPIVNEVLEGYNCTIFAYGQTGTGKTYTM 145
>Os08g0558400 Similar to Kinesin heavy chain (Fragment)
Length = 378
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 58/97 (59%), Gaps = 7/97 (7%)
Query: 103 NIRVFCRIRPFHHEESYS-SRNLFTLDESNVFLKVAET-KRKQ----YKFDKVFDQFSTQ 156
N++V R RPF +E S + + T ++ + V +T KQ + FDKVF + Q
Sbjct: 24 NVQVLLRCRPFSDDEVRSNAPQVITCNDYQREVAVTQTIAGKQIDRVFTFDKVFGPTAKQ 83
Query: 157 GDVFSE-VEPVIKSALDGYNVCIFAYGQTGSGKTYTM 192
D++ + + P++ L+G+N IFAYGQTG+GKTYTM
Sbjct: 84 RDLYDQAIIPIVNEVLEGFNCTIFAYGQTGTGKTYTM 120
>Os02g0489800 Kinesin, motor region domain containing protein
Length = 1055
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 30/50 (60%), Positives = 38/50 (76%), Gaps = 1/50 (2%)
Query: 144 YKFDKVFDQFSTQGDVFSEV-EPVIKSALDGYNVCIFAYGQTGSGKTYTM 192
+ FD V D+ STQ D+F V P++++ LDG+N IFAYGQTGSGKTYTM
Sbjct: 158 FTFDSVADEASTQEDIFQLVGRPLVENCLDGFNSSIFAYGQTGSGKTYTM 207
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.132 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,027,376
Number of extensions: 219432
Number of successful extensions: 969
Number of sequences better than 1.0e-10: 14
Number of HSP's gapped: 965
Number of HSP's successfully gapped: 14
Length of query: 196
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 100
Effective length of database: 12,023,257
Effective search space: 1202325700
Effective search space used: 1202325700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 153 (63.5 bits)