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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0489800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Kinesin, motor region domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.17 (0.0537) R2 : 0.0515
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -0.924 (0.186) R2dE : 0.0557 R2E : 0.0443
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.185 (0.117) R2dN8 : 0.0072 R2N8 : -0.00419
σ : 1
deviance : 461.26
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 31.9
memory length : 1630
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
458.99 1.01 4.16 -0.171 0.126 -0.833 0.459 -0.427 0.17 8.1 31.23 1612 -- --
459.02 0.998 4.16 -0.221 0.125 -0.858 0.484 -- 0.177 8 31.1 1608 -- --
458.98 0.998 4.16 -0.111 0.154 -0.895 -- -0.74 0.169 6.37 31.82 1663 -- --
458.98 0.998 4.17 -0.217 0.147 -0.969 -- -- 0.156 6.35 31.81 1637 -- --
460.02 0.999 4.16 -0.09 -- -0.872 -- -0.918 0.167 -- 31.9 1630 -- --
484.85 1.03 4.2 -0.0163 0.164 -- 0.102 -- 0.0194 5.51 -- -- -- --
484.85 1.03 4.2 -0.0164 0.165 -- -- -- 0.0188 5.1 -- -- -- --
460.09 0.999 4.17 -0.215 -- -0.963 -- -- 0.169 -- 31.84 1627 -- --
460.19 0.999 4.16 -- 0.147 -0.936 -- -- 0.183 6.44 31.9 1648 -- --
486.28 1.03 4.2 -0.0105 -- -- -- -- 0.023 -- -- -- -- --
484.86 1.03 4.2 -- 0.164 -- -- -- 0.0206 5.11 -- -- -- --
461.26 1 4.17 -- -- -0.924 -- -- 0.185 -- 31.9 1630 -- --
486.28 1.03 4.2 -- -- -- -- -- 0.0241 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 450.86 radiation 10 720 > th dose independent rect. 17 15
2 451.50 radiation 10 720 > th dose independent rect. 6 2
15 452.71 radiation 10 720 < th dose dependent rect. 6 1
16 453.48 radiation 10 4320 > th dose independent rect. 6 1
44 454.06 radiation 20 720 < th dose dependent rect. 24 9
72 454.80 radiation 40 1440 < th dose dependent rect. 3 3
73 454.92 radiation 10 720 > th dose independent sin 9 NA
79 455.23 radiation 40 1440 < th dose dependent rect. 1 5
80 455.30 temperature 25 720 > th dose dependent rect. 2 7
84 455.44 radiation 10 4320 > th dose dependent rect. 6 1
108 455.88 radiation 10 1440 < th dose dependent rect. 15 16
150 456.06 radiation 10 720 < th dose independent rect. 6 2
151 456.06 radiation 20 4320 < th dose dependent rect. 20 11
152 456.08 radiation 10 1440 > th dose independent rect. 15 17
156 456.10 radiation 20 4320 < th dose dependent rect. 23 8
210 456.58 radiation 10 4320 < th dose independent rect. 6 1
227 456.96 radiation 10 1440 > th dose independent sin 12 NA
247 457.16 temperature 30 1440 < th dose independent rect. 18 16
252 457.20 temperature 30 720 < th dose dependent rect. 16 1
255 457.23 temperature 30 1440 > th dose independent rect. 18 16
258 457.28 radiation 10 4320 < th dose independent rect. 4 4
267 457.33 radiation 10 4320 < th dose independent rect. 20 12
270 457.35 radiation 10 4320 < th dose independent rect. 23 9
314 457.54 radiation 10 1440 < th dose dependent sin 13 NA
322 457.59 temperature 30 1440 > th dose dependent rect. 18 16
323 457.62 radiation 10 1440 < th dose independent rect. 15 17
350 457.81 wind 5 43200 < th dose independent rect. 9 5
379 458.00 temperature 30 1440 < th dose independent rect. 4 6
384 458.02 temperature 30 1440 < th dose independent rect. 1 9
409 458.09 temperature 30 1440 > th dose independent rect. 8 2
411 458.09 temperature 30 1440 < th dose independent rect. 7 3
442 458.15 temperature 30 1440 < th dose independent rect. 22 12
462 458.19 wind 5 43200 > th dose independent rect. 10 4
479 458.24 temperature 30 14400 > th dose dependent rect. 17 1
531 458.42 temperature 30 14400 > th dose independent rect. 17 1
601 458.59 temperature 30 1440 > th dose independent sin 10 NA
621 458.62 temperature 30 14400 < th dose independent rect. 17 7
622 458.62 temperature 30 14400 < th dose independent rect. 17 15
625 458.63 temperature 30 14400 < th dose independent rect. 17 4
627 458.63 temperature 30 14400 < th dose independent rect. 17 11
628 458.63 temperature 30 14400 < th dose independent rect. 17 13
638 458.65 temperature 30 14400 < th dose independent rect. 17 2
677 458.81 temperature 30 1440 < th dose independent sin 10 NA
680 458.81 radiation 1 1440 > th dose dependent rect. 15 17
694 458.91 radiation 10 1440 < th dose independent sin 13 NA
810 459.32 wind 7 43200 < th dose dependent rect. 10 1
820 459.35 temperature 30 14400 > th dose dependent sin 12 NA
821 459.36 temperature 30 1440 > th dose dependent sin 9 NA
831 459.44 radiation 10 720 < th dose independent rect. 23 9
868 459.56 radiation 10 720 < th dose dependent rect. 24 18
872 459.60 wind 3 43200 > th dose independent rect. 10 1
874 459.61 radiation 1 720 > th dose independent rect. 18 20
918 459.68 radiation 40 1440 > th dose independent rect. 14 19
962 459.82 wind 3 43200 > th dose dependent rect. 8 6
991 459.88 wind 1 43200 > th dose dependent rect. 10 1