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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0547500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Calponin-like actin-binding domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.06 (0.0407) R2 : 0.102
β1 : 0.319 (0.149) R2dD : 0.00915 R2D : 0.0131
β2 : -- (--) R2dC : -- R2C : --
β3 : 16.6 (2.52) R2dE : 0.994 R2E : -0.796
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -40.3 (6.44) R2dD*E : 0.897 R2D*E : -0.913
γ1 : 0.0742 (0.0864) R2dN8 : 0.0019 R2N8 : -0.0029
σ : 0.756
deviance : 263.73
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 9.759
memory length : 3
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 12
open length of G : 1.94

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
258.77 0.756 4.06 0.325 0.235 16.6 0.706 -39.8 0.0737 1.9 9.788 10 12 1.01
281.71 0.788 4.03 0.399 0.189 1.77 0.93 -- 0.0612 2.63 9.788 10 12 1.01
259.82 0.751 4.06 0.319 0.252 16.6 -- -39.8 0.0764 0.153 9.76 11 12 1.01
278.97 0.778 4.02 0.557 0.246 1.56 -- -- 0.0749 1.03 12.52 6 11.9 0.066
263.73 0.756 4.06 0.319 -- 16.6 -- -40.3 0.0742 -- 9.759 3 12 1.94
284.96 0.791 4.03 0.42 0.157 -- 0.955 -- 0.0583 3.14 -- -- -- --
286.7 0.793 4.03 0.401 0.209 -- -- -- 0.0538 0.119 -- -- -- --
281.26 0.781 4.03 0.377 -- 2.19 -- -- 0.055 -- 10.74 6 11.9 0.0814
281.82 0.782 4.05 -- 0.244 2.04 -- -- 0.0114 0.664 10.74 6 11.9 0.05
289.43 0.795 4.03 0.407 -- -- -- -- 0.0569 -- -- -- -- --
290.93 0.798 4.04 -- 0.214 -- -- -- 0.00922 0.223 -- -- -- --
285.34 0.787 4.04 -- -- 2.46 -- -- 0.0259 -- 10.7 6 11.9 0.0753
293.81 0.8 4.04 -- -- -- -- -- 0.0117 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 261.69 radiation 10.0 10 < th dose dependent rect. 12 1
3 262.13 radiation 10.0 30 < th dose independent rect. 11 1
11 269.73 wind 1.0 90 < th dose independent rect. 16 2
14 269.90 wind 1.0 90 < th dose dependent rect. 16 2
17 270.12 temperature 15.0 90 > th dose independent rect. 21 11
18 270.26 wind 9.0 90 < th dose independent rect. 8 13
21 270.46 temperature 15.0 90 > th dose independent rect. 8 13
22 270.47 humidity 50.0 14400 > th dose independent rect. 22 11
24 270.49 temperature 30.0 90 < th dose independent rect. 21 11
25 270.49 humidity 50.0 90 > th dose independent rect. 21 11
27 270.49 atmosphere 995.0 90 > th dose independent rect. 21 11
28 270.49 radiation 40.0 90 < th dose independent rect. 21 11
30 270.49 atmosphere 1015.0 90 < th dose independent rect. 8 13
31 270.54 wind 9.0 90 < th dose independent rect. 21 11
33 270.68 humidity 50.0 90 > th dose independent rect. 8 13
36 271.06 temperature 10.0 90 > th dose dependent rect. 21 11
39 271.22 precipitation 0.1 90 < th dose independent rect. 21 11
41 271.22 precipitation 0.1 90 < th dose dependent rect. 21 11
43 271.45 temperature 30.0 90 > th dose dependent rect. 17 18
44 271.48 temperature 10.0 1440 > th dose independent rect. 22 11
47 271.48 humidity 50.0 1440 > th dose independent rect. 22 11
49 271.48 atmosphere 995.0 1440 > th dose independent rect. 22 11
50 271.48 temperature 10.0 1440 > th dose independent rect. 9 13
69 271.98 radiation 20.0 14400 < th dose independent rect. 18 12
71 272.06 wind 1.0 30 > th dose independent rect. 8 13
72 272.13 temperature 30.0 30 < th dose independent rect. 8 13
82 272.29 temperature 20.0 720 > th dose independent rect. 8 10
88 272.37 precipitation 0.1 10 < th dose independent rect. 8 13
89 272.37 precipitation 0.1 10 < th dose dependent rect. 8 13
90 272.38 temperature 15.0 720 > th dose independent rect. 10 23
91 272.40 humidity 90.0 270 > th dose independent rect. 11 15
95 272.45 wind 9.0 720 < th dose independent rect. 22 23
97 272.49 radiation 40.0 90 < th dose dependent rect. 21 11
105 272.88 humidity 50.0 14400 > th dose independent rect. 18 12
106 272.89 wind 9.0 720 < th dose independent rect. 6 14
107 272.91 temperature 15.0 720 > th dose independent rect. 20 10
108 272.92 temperature 15.0 720 > th dose independent rect. 22 7
109 272.93 temperature 30.0 90 > th dose dependent sin 10 NA
111 272.96 humidity 90.0 270 > th dose independent rect. 19 7
112 273.00 wind 9.0 720 < th dose independent rect. 8 10
117 273.09 temperature 15.0 720 > th dose independent rect. 18 14
123 273.24 temperature 15.0 720 > th dose independent rect. 22 23
124 273.24 temperature 25.0 90 > th dose dependent rect. 19 2
126 273.31 precipitation 0.1 720 < th dose independent rect. 21 1
128 273.31 precipitation 0.1 720 < th dose dependent rect. 21 1
130 273.42 temperature 20.0 720 > th dose independent rect. 9 1
138 273.56 temperature 20.0 720 > th dose independent rect. 10 6
140 273.57 radiation 1.0 90 > th dose independent rect. 10 22
142 273.60 precipitation 0.1 720 < th dose independent rect. 10 7
144 273.60 precipitation 0.1 720 < th dose dependent rect. 10 7
150 273.72 temperature 15.0 720 > th dose independent rect. 16 18
155 273.78 humidity 50.0 720 > th dose independent rect. 9 1
159 273.80 wind 5.0 90 > th dose dependent rect. 16 18
162 273.82 humidity 90.0 270 > th dose dependent rect. 10 16
168 273.93 humidity 50.0 14400 > th dose independent rect. 18 4
173 273.95 humidity 80.0 720 > th dose dependent rect. 17 1
188 274.04 humidity 90.0 270 > th dose independent sin 18 NA
196 274.10 humidity 60.0 720 > th dose independent rect. 18 14
197 274.10 humidity 50.0 30 > th dose dependent rect. 8 13
202 274.16 temperature 15.0 720 > th dose independent rect. 21 1
205 274.19 wind 9.0 720 < th dose independent rect. 9 1
206 274.19 radiation 1.0 720 > th dose independent rect. 9 1
211 274.22 atmosphere 995.0 720 > th dose independent rect. 9 1
212 274.22 atmosphere 1015.0 720 < th dose independent rect. 9 1
217 274.24 precipitation 0.1 720 < th dose independent rect. 9 1
219 274.24 precipitation 0.1 720 < th dose dependent rect. 9 1
224 274.26 temperature 15.0 720 > th dose independent rect. 6 14
226 274.27 humidity 90.0 270 > th dose dependent sin 18 NA
227 274.27 humidity 90.0 270 > th dose dependent rect. 18 7
230 274.28 temperature 15.0 720 > th dose independent rect. 22 15
252 274.32 wind 9.0 720 < th dose independent rect. 14 14
270 274.38 radiation 1.0 720 < th dose dependent rect. 21 1
273 274.39 temperature 30.0 720 < th dose independent rect. 21 1
274 274.39 humidity 50.0 720 > th dose independent rect. 21 1
277 274.39 atmosphere 995.0 720 > th dose independent rect. 21 1
278 274.39 radiation 1.0 720 < th dose independent rect. 21 1
291 274.43 wind 7.0 90 > th dose independent rect. 16 18
301 274.54 temperature 15.0 720 > th dose independent rect. 1 9
303 274.55 wind 9.0 720 < th dose independent rect. 16 18
306 274.57 wind 9.0 720 < th dose independent rect. 21 1
311 274.60 wind 5.0 270 < th dose independent rect. 11 14
312 274.61 humidity 60.0 90 > th dose independent rect. 16 19
320 274.64 atmosphere 1005.0 90 > th dose dependent rect. 16 5
328 274.69 humidity 90.0 270 > th dose dependent rect. 21 2
336 274.76 wind 9.0 720 < th dose independent rect. 16 10
337 274.77 radiation 10.0 720 < th dose independent rect. 20 10
345 274.79 atmosphere 995.0 30 > th dose independent rect. 21 23
349 274.80 humidity 60.0 90 > th dose independent rect. 8 22
351 274.81 atmosphere 1000.0 10 < th dose dependent rect. 10 2
361 274.86 temperature 15.0 4320 > th dose independent rect. 6 3
362 274.86 wind 9.0 720 < th dose independent rect. 22 15
366 274.87 humidity 60.0 90 > th dose independent rect. 16 5
368 274.87 wind 9.0 720 < th dose independent rect. 5 17
372 274.88 wind 1.0 720 < th dose dependent rect. 9 1
374 274.90 temperature 30.0 720 < th dose independent rect. 18 14
375 274.92 wind 9.0 720 < th dose independent rect. 10 7
377 274.93 temperature 30.0 10 < th dose independent sin 11 NA
382 274.96 temperature 30.0 720 < th dose independent rect. 20 10
383 274.96 humidity 50.0 720 > th dose independent rect. 20 10
386 274.96 atmosphere 995.0 720 > th dose independent rect. 20 10
391 274.96 atmosphere 1015.0 720 < th dose independent rect. 6 14
394 275.00 humidity 50.0 720 > th dose independent rect. 1 9
396 275.00 atmosphere 1015.0 720 < th dose independent rect. 8 10
399 275.00 precipitation 0.1 720 < th dose independent rect. 4 18
400 275.00 precipitation 0.1 720 < th dose dependent rect. 4 18
402 275.02 radiation 40.0 720 < th dose independent rect. 18 14
403 275.02 temperature 15.0 720 > th dose independent rect. 4 18
408 275.04 wind 7.0 720 < th dose independent rect. 18 14
415 275.07 wind 9.0 720 < th dose independent rect. 20 10
421 275.10 wind 1.0 90 < th dose dependent rect. 10 2
426 275.13 atmosphere 1000.0 90 < th dose dependent rect. 10 1
429 275.15 humidity 90.0 720 < th dose independent rect. 10 6
435 275.18 humidity 80.0 720 > th dose independent rect. 16 2
438 275.19 temperature 20.0 30 > th dose independent rect. 21 14
439 275.19 radiation 20.0 4320 < th dose dependent rect. 21 1
441 275.20 humidity 50.0 14400 > th dose independent rect. 6 3
454 275.21 temperature 15.0 30 > th dose dependent rect. 21 14
455 275.22 temperature 10.0 720 > th dose independent rect. 10 7
456 275.22 atmosphere 1015.0 720 < th dose independent rect. 10 7
457 275.22 radiation 1.0 720 < th dose independent rect. 22 7
463 275.23 atmosphere 1015.0 720 < th dose independent rect. 1 9
465 275.23 radiation 10.0 720 < th dose dependent rect. 22 7
466 275.23 radiation 40.0 720 < th dose dependent rect. 20 10
467 275.24 wind 9.0 720 < th dose independent rect. 13 9
468 275.24 precipitation 0.1 270 < th dose independent rect. 10 13
470 275.24 precipitation 0.1 270 < th dose dependent rect. 10 13
514 275.27 wind 9.0 720 < th dose independent rect. 22 7
522 275.28 temperature 30.0 720 < th dose independent rect. 22 7
523 275.28 humidity 50.0 720 > th dose independent rect. 22 7
526 275.28 atmosphere 995.0 720 > th dose independent rect. 22 7
536 275.28 wind 9.0 90 < th dose dependent rect. 21 11
539 275.29 wind 9.0 1440 < th dose independent rect. 22 11
541 275.29 atmosphere 1015.0 90 < th dose independent rect. 21 11
542 275.29 temperature 10.0 30 > th dose dependent rect. 21 23
543 275.30 wind 5.0 270 < th dose independent sin 16 NA
548 275.32 atmosphere 1005.0 90 > th dose independent rect. 19 2
552 275.32 wind 5.0 90 > th dose dependent rect. 16 14
566 275.36 wind 9.0 720 < th dose independent rect. 10 15
572 275.37 radiation 20.0 720 < th dose independent rect. 16 10
574 275.38 wind 9.0 720 < th dose independent rect. 1 9
577 275.38 wind 5.0 90 > th dose dependent rect. 16 11
580 275.39 wind 5.0 30 < th dose independent rect. 20 1
581 275.39 humidity 50.0 720 > th dose independent rect. 17 17
586 275.41 wind 7.0 720 < th dose independent rect. 14 6
593 275.42 temperature 30.0 30 < th dose independent rect. 11 10
599 275.43 temperature 25.0 30 > th dose independent rect. 20 1
601 275.43 precipitation 0.1 720 < th dose independent rect. 22 6
602 275.43 temperature 10.0 720 > th dose independent rect. 13 9
604 275.43 atmosphere 995.0 720 > th dose independent rect. 22 15
605 275.43 precipitation 0.1 720 < th dose dependent rect. 22 6
616 275.44 humidity 90.0 270 < th dose independent rect. 10 13
630 275.46 humidity 80.0 30 > th dose independent rect. 20 1
633 275.46 atmosphere 995.0 720 > th dose independent rect. 1 9
640 275.46 atmosphere 995.0 720 > th dose independent rect. 19 13
641 275.46 temperature 10.0 720 > th dose independent rect. 10 15
656 275.52 atmosphere 995.0 270 > th dose independent rect. 10 13
658 275.52 humidity 60.0 90 > th dose independent rect. 12 23
670 275.55 atmosphere 1000.0 10 < th dose independent rect. 10 2
672 275.55 humidity 60.0 90 > th dose independent rect. 16 13
680 275.56 atmosphere 1005.0 30 > th dose dependent rect. 20 1
693 275.58 wind 7.0 30 < th dose dependent rect. 20 1
710 275.61 humidity 70.0 30 > th dose dependent rect. 20 1
714 275.63 wind 3.0 30 > th dose independent rect. 20 1
723 275.63 temperature 30.0 90 > th dose dependent rect. 10 1
736 275.65 humidity 90.0 30 < th dose independent rect. 20 1
761 275.67 radiation 1.0 720 > th dose independent rect. 10 6
769 275.68 temperature 10.0 30 > th dose independent rect. 20 1
771 275.68 temperature 30.0 30 < th dose independent rect. 20 1
772 275.68 humidity 50.0 30 > th dose independent rect. 20 1
775 275.68 atmosphere 995.0 30 > th dose independent rect. 20 1
776 275.68 atmosphere 1010.0 30 < th dose independent rect. 20 1
778 275.68 radiation 1.0 30 < th dose independent rect. 20 1
783 275.68 precipitation 0.1 30 < th dose independent rect. 20 1
797 275.68 temperature 10.0 30 > th dose independent rect. 21 23
799 275.68 radiation 1.0 30 < th dose dependent rect. 20 1
804 275.68 precipitation 0.1 30 < th dose dependent rect. 20 1
815 275.71 atmosphere 1005.0 90 > th dose independent rect. 16 5
821 275.72 radiation 10.0 10 > th dose independent rect. 11 22
824 275.72 humidity 50.0 90 > th dose dependent rect. 21 11
826 275.73 wind 7.0 90 > th dose independent rect. 16 10
840 275.76 wind 9.0 720 < th dose independent rect. 8 18
844 275.77 atmosphere 1000.0 90 < th dose independent rect. 10 1
848 275.77 atmosphere 1015.0 30 < th dose dependent rect. 20 1
849 275.77 radiation 40.0 720 < th dose dependent rect. 16 10
854 275.80 temperature 20.0 720 > th dose independent rect. 17 1
862 275.83 temperature 15.0 720 > th dose independent rect. 20 18
871 275.85 wind 1.0 30 > th dose dependent rect. 20 1
900 275.92 humidity 50.0 30 > th dose independent rect. 21 23
908 275.94 temperature 10.0 43200 > th dose independent rect. 9 2
910 275.94 humidity 90.0 30 < th dose dependent rect. 20 1
931 275.99 wind 5.0 720 < th dose independent rect. 16 1
932 275.99 wind 7.0 720 < th dose independent rect. 6 22
934 275.99 wind 7.0 720 < th dose dependent rect. 16 1
936 276.00 temperature 30.0 10 > th dose independent rect. 17 2
980 276.05 precipitation 0.1 30 < th dose independent rect. 21 23
982 276.05 temperature 30.0 270 > th dose dependent rect. 8 3
997 276.05 precipitation 0.1 30 < th dose dependent rect. 21 23
998 276.06 temperature 30.0 90 > th dose independent rect. 16 19