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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0105700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Kinesin heavy chain (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.36 (0.0528) R2 : 0.0674
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.622 (0.132) R2dC : 0.0455 R2C : 0.0396
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.36 (0.111) R2dN8 : 0.0278 R2N8 : 0.0218
σ : 0.995
deviance : 452.01
__
_____
C
peak time of C : 20.7
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
418.72 0.961 5.37 -0.24 0.936 0.712 0.903 -1.55 -0.242 19.4 90 266 -- --
427.34 0.963 5.35 -0.329 0.926 0.684 1.54 -- -0.287 19 90 266 -- --
420.71 0.955 5.37 -0.245 0.939 0.714 -- -1.76 -0.239 19.3 90.4 269 -- --
433.27 0.969 5.35 -0.347 0.944 0.68 -- -- -0.248 19.1 90 266 -- --
455.57 0.994 5.35 -0.18 -- 0.411 -- -1.08 -0.276 -- 90 116 -- --
446.71 0.991 5.37 -0.206 0.627 -- 1.1 -- -0.386 20.5 -- -- -- --
450.46 0.994 5.37 -0.243 0.622 -- -- -- -0.387 20.7 -- -- -- --
461.22 1 5.33 -0.32 -- 0.384 -- -- -0.28 -- 90 78 -- --
436.58 0.973 5.34 -- 0.925 0.632 -- -- -0.226 19.2 90.1 265 -- --
472.37 1.02 5.35 -0.244 -- -- -- -- -0.392 -- -- -- -- --
452.01 0.995 5.36 -- 0.622 -- -- -- -0.36 20.7 -- -- -- --
463.62 1 5.32 -- -- 0.378 -- -- -0.259 -- 90.51 78 -- --
473.94 1.02 5.35 -- -- -- -- -- -0.365 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 408.04 wind 5 1440 > th dose dependent rect. 7 1
3 412.03 wind 5 1440 > th dose independent rect. 7 1
4 412.48 wind 5 1440 < th dose independent rect. 7 1
5 412.51 wind 5 720 > th dose dependent rect. 10 3
10 414.20 wind 7 720 > th dose independent rect. 8 5
14 414.26 humidity 90 90 < th dose independent rect. 9 21
15 414.30 wind 1 43200 < th dose dependent rect. 3 2
16 414.51 wind 9 14400 < th dose independent rect. 14 1
24 415.33 radiation 20 270 < th dose independent rect. 4 7
28 415.58 wind 7 14400 > th dose dependent rect. 14 1
46 416.75 temperature 25 720 < th dose dependent rect. 8 11
47 416.78 wind 9 270 < th dose independent sin 3 NA
49 416.81 wind 5 720 > th dose dependent sin 3 NA
60 417.29 humidity 90 270 > th dose independent rect. 8 23
68 417.49 wind 9 14400 > th dose dependent sin 14 NA
72 417.61 humidity 80 43200 > th dose independent rect. 3 14
75 417.70 humidity 90 270 > th dose independent rect. 3 23
77 417.75 wind 1 43200 < th dose independent rect. 3 2
78 417.79 wind 7 14400 > th dose independent rect. 14 1
80 417.82 humidity 90 270 > th dose independent rect. 20 22
102 418.14 radiation 30 270 < th dose dependent rect. 4 7
103 418.16 wind 9 14400 > th dose dependent rect. 14 7
110 418.20 humidity 70 43200 > th dose dependent rect. 2 14
112 418.24 humidity 70 43200 > th dose dependent rect. 1 16
115 418.28 wind 9 14400 > th dose dependent rect. 14 16
128 418.38 atmosphere 1000 14400 < th dose independent rect. 18 1
134 418.41 temperature 20 720 < th dose independent rect. 8 13
143 418.53 wind 7 720 < th dose independent rect. 21 16
146 418.55 humidity 90 270 < th dose independent rect. 22 23
148 418.58 wind 1 43200 > th dose independent rect. 3 2
149 418.58 humidity 90 90 > th dose dependent sin 21 NA
157 418.66 atmosphere 1000 14400 > th dose independent rect. 18 1
170 418.75 humidity 90 270 > th dose independent no NA NA
171 418.75 radiation 30 10 < th dose independent rect. 5 21
172 418.76 humidity 90 270 > th dose independent rect. 13 23
175 418.77 humidity 90 270 > th dose independent rect. 16 23
187 418.84 temperature 10 270 > th dose dependent rect. 9 19
188 418.85 humidity 80 43200 < th dose independent rect. 2 15
193 418.87 humidity 70 43200 > th dose dependent sin 3 NA
194 418.87 wind 9 4320 > th dose dependent rect. 19 17
204 418.96 wind 9 14400 > th dose independent rect. 20 1
207 418.96 temperature 25 14400 > th dose dependent rect. 23 3
209 418.99 humidity 80 43200 < th dose independent rect. 3 13
211 419.00 temperature 25 270 < th dose dependent sin 20 NA
216 419.04 wind 7 720 > th dose independent sin 4 NA
262 419.29 wind 9 14400 < th dose independent rect. 14 7
290 419.48 humidity 80 43200 > th dose independent sin 2 NA
291 419.49 atmosphere 995 14400 < th dose dependent rect. 14 1
311 419.59 wind 9 14400 > th dose independent sin 14 NA
314 419.60 wind 9 14400 < th dose independent rect. 20 1
345 419.72 temperature 25 14400 < th dose independent rect. 3 1
349 419.74 wind 5 1440 > th dose dependent rect. 3 6
357 419.77 radiation 30 270 < th dose independent rect. 3 22
365 419.80 wind 9 4320 > th dose independent rect. 17 19
369 419.83 atmosphere 1000 14400 > th dose independent rect. 14 1
371 419.84 atmosphere 1000 14400 < th dose independent rect. 14 1
376 419.87 wind 9 14400 > th dose independent rect. 14 7
379 419.88 atmosphere 1000 14400 < th dose dependent rect. 15 3
410 419.98 atmosphere 1000 14400 < th dose dependent rect. 17 1
422 420.02 temperature 25 43200 > th dose independent rect. 4 1
425 420.02 wind 9 14400 > th dose dependent rect. 20 1
430 420.05 atmosphere 1000 14400 < th dose independent rect. 4 1
440 420.08 atmosphere 995 14400 > th dose independent rect. 10 5
447 420.11 wind 9 14400 < th dose independent sin 14 NA
457 420.14 wind 9 4320 > th dose independent rect. 19 17
463 420.17 atmosphere 1000 14400 > th dose independent rect. 4 1
494 420.23 radiation 20 43200 > th dose independent rect. 6 1
517 420.25 wind 7 270 > th dose dependent rect. 9 11
544 420.30 wind 9 14400 < th dose independent rect. 14 17
549 420.31 atmosphere 1000 14400 < th dose independent rect. 14 8
550 420.31 humidity 90 270 < th dose independent rect. 16 23
566 420.34 atmosphere 1000 14400 > th dose independent rect. 21 1
569 420.34 wind 7 14400 > th dose independent rect. 13 22
581 420.35 atmosphere 1000 14400 < th dose independent rect. 21 1
597 420.37 temperature 25 43200 > th dose dependent rect. 5 1
621 420.39 radiation 20 270 < th dose dependent rect. 5 5
641 420.43 atmosphere 1000 14400 > th dose independent rect. 14 8
647 420.44 wind 9 14400 < th dose independent rect. 14 15
664 420.45 wind 7 270 > th dose dependent rect. 17 21
697 420.50 wind 7 270 > th dose independent rect. 17 21
699 420.50 wind 7 14400 > th dose independent rect. 18 22
725 420.53 wind 9 14400 > th dose independent rect. 14 17
772 420.60 atmosphere 1000 14400 > th dose independent rect. 23 1
794 420.62 atmosphere 1015 14400 < th dose dependent rect. 8 1
821 420.67 humidity 90 270 < th dose independent no NA NA
827 420.67 temperature 25 14400 < th dose independent rect. 2 4
839 420.68 wind 7 14400 > th dose independent rect. 3 18
842 420.68 wind 9 14400 > th dose dependent rect. 20 8
865 420.71 humidity 90 270 < th dose independent rect. 5 23
872 420.73 humidity 90 43200 < th dose independent rect. 14 1
889 420.74 wind 9 4320 < th dose independent rect. 17 19
892 420.74 wind 7 14400 > th dose dependent rect. 17 22
905 420.76 humidity 90 43200 < th dose independent rect. 13 16
917 420.77 atmosphere 995 14400 > th dose dependent rect. 8 1
923 420.78 temperature 20 720 > th dose independent rect. 8 15
927 420.78 atmosphere 995 14400 > th dose dependent rect. 5 1
939 420.80 atmosphere 1000 14400 < th dose independent sin 16 NA
940 420.80 temperature 10 43200 > th dose independent rect. 14 7
948 420.81 wind 9 14400 > th dose independent rect. 20 8
964 420.82 atmosphere 1015 14400 < th dose dependent rect. 1 1
965 420.82 atmosphere 1015 14400 < th dose dependent rect. 5 1
967 420.82 atmosphere 1015 14400 < th dose dependent rect. 5 4