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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0558400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Kinesin heavy chain (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.11 (0.0394) R2 : 0.197
β1 : 0.829 (0.147) R2dD : 0.064 R2D : -0.027
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.74 (0.177) R2dE : 0.212 R2E : 0.0646
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.522 (0.0894) R2dN8 : 0.094 R2N8 : -0.0353
σ : 0.725
deviance : 240.16
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 25.1
memory length : 59
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
234.56 0.72 5.1 1.02 0.233 1.58 0.771 -1.17 0.545 21.9 25.1 30 -- --
236.72 0.722 5.11 0.848 0.114 1.73 1.05 -- 0.533 19.2 25.42 30 -- --
236.17 0.716 5.11 0.939 0.255 1.55 -- -0.743 0.509 23.2 25.1 59 -- --
237.41 0.722 5.12 0.79 0.224 1.59 -- -- 0.49 23.6 25.1 59 -- --
239.39 0.725 5.1 0.928 -- 1.69 -- -0.656 0.543 -- 25.1 59 -- --
275.37 0.778 5.19 0.418 0.537 -- 0.00488 -- 0.174 0.634 -- -- -- --
275.37 0.777 5.19 0.418 0.537 -- -- -- 0.174 0.637 -- -- -- --
240.16 0.725 5.11 0.829 -- 1.74 -- -- 0.522 -- 25.1 59 -- --
252.41 0.744 5.15 -- 0.289 1.29 -- -- 0.351 0.109 25.1 59 -- --
293.42 0.8 5.18 0.437 -- -- -- -- 0.184 -- -- -- -- --
279.98 0.783 5.2 -- 0.543 -- -- -- 0.128 0.674 -- -- -- --
256.99 0.749 5.14 -- -- 1.47 -- -- 0.392 -- 25.3 29 -- --
298.46 0.806 5.19 -- -- -- -- -- 0.135 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 228.94 temperature 30 30 < th dose dependent rect. 3 23
3 229.73 temperature 25 90 < th dose dependent rect. 11 19
5 230.81 temperature 15 30 > th dose dependent rect. 9 23
12 231.49 temperature 15 270 > th dose dependent rect. 6 22
53 233.58 temperature 10 270 > th dose dependent rect. 4 23
63 234.03 temperature 15 270 > th dose dependent rect. 9 18
65 234.05 temperature 25 10 < th dose dependent rect. 13 23
79 234.30 temperature 25 10 < th dose dependent rect. 23 23
92 234.58 temperature 25 90 < th dose dependent rect. 21 23
93 234.59 temperature 25 30 < th dose dependent no NA NA
94 234.60 temperature 25 30 < th dose dependent rect. 17 23
102 234.67 temperature 25 30 < th dose dependent rect. 15 23
103 234.68 temperature 10 90 > th dose dependent no NA NA
104 234.69 temperature 25 30 < th dose dependent rect. 1 23
105 234.70 temperature 25 30 < th dose dependent rect. 19 23
115 234.85 temperature 25 720 < th dose independent rect. 10 19
173 235.64 temperature 25 10 < th dose dependent rect. 5 23
189 235.93 temperature 25 720 < th dose independent rect. 10 16
192 235.95 temperature 25 720 > th dose independent rect. 9 19
269 236.80 temperature 15 270 > th dose dependent rect. 19 23
302 237.23 temperature 25 720 < th dose independent sin 18 NA
421 238.12 temperature 30 1440 < th dose dependent rect. 11 1
476 238.43 temperature 25 720 > th dose independent sin 18 NA
490 238.52 temperature 15 90 > th dose dependent rect. 23 23
555 238.88 temperature 15 270 > th dose dependent rect. 13 23
605 239.14 temperature 15 10 > th dose dependent rect. 23 23
643 239.36 temperature 30 1440 < th dose dependent rect. 10 5
647 239.37 temperature 25 720 > th dose independent rect. 22 23
676 239.51 temperature 25 1440 > th dose independent rect. 11 4
736 239.72 temperature 25 1440 < th dose independent rect. 11 4
764 239.85 temperature 25 720 > th dose independent no NA NA
831 240.10 temperature 30 720 < th dose dependent sin 19 NA
842 240.16 temperature 25 720 < th dose independent rect. 3 23
863 240.24 temperature 25 720 > th dose independent rect. 15 23
881 240.33 temperature 25 720 < th dose independent no NA NA
890 240.37 temperature 25 1440 < th dose dependent rect. 5 11
968 240.65 temperature 10 720 > th dose dependent rect. 6 15
998 240.75 temperature 25 720 > th dose independent rect. 20 23