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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0114000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Kinesin.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.54 (0.0416) R2 : 0.209
β1 : -0.986 (0.152) R2dD : 0.0756 R2D : 0.034
β2 : 0.853 (0.107) R2dC : 0.11 R2C : 0.085
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.497 (0.0888) R2dN8 : 0.0731 R2N8 : 0.0272
σ : 0.782
deviance : 278.56
__
_____
C
peak time of C : 4.76
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
239.11 0.727 4.57 -1.15 1.9 -1.25 -5.07 3.69 -0.573 2.67 0.7996 30 3.22 --
251.02 0.744 4.56 -1.06 1.63 -1.01 -1.51 -- -0.527 2.86 0.7996 30 3.22 --
258.18 0.754 4.55 -1.03 1.69 -1.08 -- -0.231 -0.518 2.61 0.7996 30 3.22 --
258.01 0.748 4.57 -1.03 1.84 -1.2 -- -- -0.548 2.54 0.7802 32 3.74 --
265.52 0.759 4.56 -0.915 -- 0.817 -- -1.57 -0.539 -- 10.01 268 1.99 --
267.17 0.766 4.54 -0.993 0.868 -- -2.1 -- -0.508 4.87 -- -- -- --
278.56 0.782 4.54 -0.986 0.853 -- -- -- -0.497 4.76 -- -- -- --
273.77 0.771 4.55 -0.964 -- 0.872 -- -- -0.509 -- 10.01 272 1.81 --
285.5 0.787 4.55 -- 1.82 -1.2 -- -- -0.449 2.51 1.01 29 3.8 --
317.06 0.832 4.54 -0.954 -- -- -- -- -0.475 -- -- -- -- --
304.19 0.816 4.51 -- 0.835 -- -- -- -0.387 4.8 -- -- -- --
296.4 0.802 4.53 -- -- 0.934 -- -- -0.375 -- 10 249 1.04 --
341.08 0.862 4.52 -- -- -- -- -- -0.369 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 230.63 temperature 25.0 90 > th dose independent rect. 1 3
2 230.95 temperature 25.0 90 > th dose dependent rect. 1 4
3 232.43 temperature 25.0 270 > th dose independent rect. 1 1
5 233.37 temperature 25.0 270 > th dose dependent rect. 1 1
17 238.06 temperature 25.0 270 < th dose independent rect. 23 9
20 238.85 temperature 25.0 270 < th dose independent rect. 1 7
25 239.39 radiation 1.0 10 < th dose independent rect. 21 17
28 239.55 radiation 1.0 30 < th dose independent sin 9 NA
29 239.56 radiation 1.0 30 > th dose independent sin 9 NA
39 239.99 wind 9.0 10 < th dose independent rect. 3 23
46 240.24 radiation 1.0 30 < th dose dependent sin 9 NA
50 240.48 radiation 1.0 10 < th dose independent rect. 21 9
51 240.49 radiation 1.0 10 < th dose dependent rect. 21 17
57 240.57 radiation 1.0 10 < th dose independent rect. 21 15
77 240.97 atmosphere 995.0 10 > th dose independent rect. 3 23
81 241.03 atmosphere 1015.0 10 < th dose dependent rect. 2 1
92 241.52 temperature 10.0 10 > th dose dependent rect. 2 1
93 241.53 wind 9.0 10 < th dose independent rect. 2 1
94 241.53 temperature 10.0 10 > th dose independent rect. 2 1
96 241.53 temperature 30.0 10 < th dose independent rect. 2 1
97 241.53 humidity 50.0 10 > th dose independent rect. 2 1
100 241.53 atmosphere 995.0 10 > th dose independent rect. 2 1
101 241.53 atmosphere 1010.0 10 < th dose independent rect. 2 1
103 241.53 radiation 1.0 10 < th dose independent rect. 2 1
108 241.53 precipitation 0.1 10 < th dose independent rect. 2 1
109 241.53 temperature 10.0 10 > th dose independent rect. 3 23
110 241.53 radiation 1.0 10 < th dose dependent rect. 2 1
115 241.53 precipitation 0.1 10 < th dose dependent rect. 2 1
118 241.54 radiation 1.0 30 < th dose dependent rect. 21 9
120 241.60 radiation 40.0 30 < th dose independent rect. 3 7
126 241.65 radiation 1.0 30 < th dose dependent rect. 21 15
134 241.70 precipitation 0.1 10 < th dose independent rect. 3 23
139 241.70 precipitation 0.1 10 < th dose dependent rect. 3 23
140 241.71 humidity 50.0 10 > th dose dependent rect. 2 1
145 241.73 wind 3.0 10 < th dose independent rect. 2 1
160 241.93 wind 9.0 10 < th dose dependent rect. 2 1
161 241.93 temperature 30.0 10 < th dose dependent rect. 2 1
163 241.98 atmosphere 995.0 10 > th dose dependent rect. 2 1
164 241.99 wind 1.0 30 < th dose dependent rect. 2 1
172 242.05 radiation 40.0 10 < th dose independent rect. 5 5
186 242.29 wind 1.0 30 > th dose independent rect. 2 1
194 242.39 radiation 1.0 10 < th dose dependent rect. 21 21
211 242.40 radiation 1.0 10 > th dose independent rect. 5 5
239 242.49 humidity 60.0 270 > th dose dependent rect. 3 6
256 242.56 temperature 20.0 10 > th dose dependent rect. 1 4
270 242.66 wind 7.0 270 < th dose independent rect. 19 8
295 242.94 humidity 80.0 270 > th dose independent rect. 3 5
299 243.00 atmosphere 1000.0 90 > th dose independent rect. 3 7
311 243.13 humidity 60.0 90 > th dose independent rect. 3 7
340 243.47 humidity 50.0 90 > th dose dependent rect. 3 8
341 243.49 wind 9.0 270 < th dose independent rect. 3 16
345 243.51 temperature 30.0 90 < th dose dependent rect. 3 7
350 243.66 wind 9.0 270 < th dose dependent rect. 3 5
356 243.88 humidity 60.0 10 > th dose independent rect. 5 5
360 243.96 temperature 30.0 10 < th dose independent rect. 5 5
365 244.03 atmosphere 1015.0 10 < th dose independent rect. 3 23
366 244.05 wind 9.0 90 < th dose dependent rect. 3 7
373 244.14 atmosphere 995.0 270 > th dose independent rect. 3 16
375 244.22 atmosphere 1000.0 10 > th dose independent rect. 5 5
380 244.32 atmosphere 1000.0 270 > th dose independent rect. 3 5
381 244.34 humidity 50.0 10 > th dose dependent rect. 5 6
388 244.38 precipitation 0.1 90 < th dose independent rect. 3 7
389 244.38 precipitation 0.1 90 < th dose dependent rect. 3 7
394 244.53 wind 9.0 10 < th dose independent rect. 5 16
397 244.58 precipitation 0.1 90 < th dose independent rect. 10 17
398 244.58 precipitation 0.1 90 < th dose dependent rect. 10 17
399 244.61 wind 9.0 1440 < th dose independent rect. 3 1
400 244.61 temperature 10.0 1440 > th dose independent rect. 3 1
403 244.61 temperature 30.0 1440 < th dose independent rect. 3 1
407 244.61 humidity 50.0 1440 > th dose independent rect. 3 1
416 244.61 atmosphere 995.0 1440 > th dose independent rect. 3 1
417 244.61 radiation 1.0 1440 < th dose independent rect. 3 1
437 244.61 temperature 10.0 1440 > th dose independent rect. 4 23
440 244.61 radiation 1.0 1440 < th dose dependent rect. 3 1
446 244.62 temperature 10.0 90 > th dose independent rect. 3 7
451 244.62 atmosphere 1015.0 90 < th dose independent rect. 3 7
452 244.62 temperature 10.0 90 > th dose independent rect. 10 17
475 244.68 wind 9.0 90 < th dose independent rect. 3 7
479 244.70 precipitation 0.1 270 < th dose independent rect. 3 16
480 244.70 precipitation 0.1 270 < th dose dependent rect. 3 16
484 244.75 humidity 50.0 270 > th dose independent rect. 3 16
488 244.78 wind 7.0 270 < th dose independent rect. 3 5
489 244.78 wind 5.0 270 < th dose dependent rect. 5 1
491 244.81 temperature 10.0 270 > th dose independent rect. 19 8
492 244.81 temperature 30.0 270 < th dose independent rect. 19 8
493 244.81 humidity 50.0 270 > th dose independent rect. 19 8
494 244.81 atmosphere 995.0 270 > th dose independent rect. 19 8
495 244.81 radiation 1.0 270 < th dose independent rect. 19 8
500 244.81 temperature 10.0 270 > th dose independent rect. 3 16
501 244.81 atmosphere 1015.0 270 < th dose independent rect. 3 16
502 244.81 radiation 1.0 270 < th dose dependent rect. 19 8
508 244.84 humidity 60.0 270 > th dose independent rect. 14 18
510 244.87 precipitation 0.1 270 < th dose independent rect. 3 5
511 244.87 precipitation 0.1 270 < th dose dependent rect. 3 5
522 244.98 precipitation 0.1 270 < th dose independent rect. 19 8
523 244.98 radiation 40.0 270 < th dose dependent rect. 3 5
524 244.98 precipitation 0.1 270 < th dose dependent rect. 19 8
527 245.04 precipitation 0.1 270 < th dose independent rect. 8 19
528 245.04 precipitation 0.1 270 < th dose dependent rect. 8 19
530 245.06 radiation 40.0 270 < th dose independent rect. 3 5
537 245.08 wind 9.0 10 < th dose dependent rect. 5 5
539 245.09 temperature 10.0 270 > th dose independent rect. 3 5
542 245.09 humidity 50.0 270 > th dose independent rect. 3 5
545 245.09 atmosphere 1015.0 270 < th dose independent rect. 3 5
546 245.09 temperature 10.0 270 > th dose independent rect. 8 19
561 245.22 precipitation 0.1 10 < th dose independent rect. 5 5
562 245.22 precipitation 0.1 10 < th dose dependent rect. 5 5
564 245.24 atmosphere 995.0 10 > th dose independent rect. 5 16
586 245.35 precipitation 0.1 10 < th dose independent rect. 10 19
588 245.35 precipitation 0.1 10 < th dose dependent rect. 10 19
599 245.48 wind 9.0 10 < th dose independent rect. 5 5
600 245.48 temperature 10.0 10 > th dose independent rect. 5 5
604 245.48 atmosphere 1015.0 10 < th dose independent rect. 5 5
605 245.48 temperature 10.0 10 > th dose independent rect. 10 19
617 245.55 humidity 50.0 30 > th dose independent rect. 3 23
625 245.62 temperature 10.0 1440 > th dose independent rect. 4 7
628 245.62 atmosphere 995.0 1440 > th dose independent rect. 4 7
630 245.62 temperature 10.0 1440 > th dose independent rect. 11 17
636 245.69 wind 1.0 270 > th dose independent rect. 8 19
676 245.92 humidity 80.0 270 > th dose independent rect. 5 1
677 245.92 wind 5.0 10 < th dose independent rect. 5 5
678 245.92 precipitation 0.1 10 < th dose independent rect. 5 16
679 245.92 precipitation 0.1 10 < th dose dependent rect. 5 16
722 246.14 wind 3.0 270 < th dose independent rect. 5 1
742 246.24 wind 9.0 90 < th dose independent rect. 10 17
744 246.26 temperature 10.0 10 > th dose independent rect. 21 8
745 246.26 temperature 30.0 10 < th dose independent rect. 21 8
746 246.26 humidity 50.0 10 > th dose independent rect. 21 8
749 246.26 atmosphere 995.0 10 > th dose independent rect. 21 8
755 246.26 temperature 10.0 10 > th dose independent rect. 5 16
757 246.26 atmosphere 1015.0 10 < th dose independent rect. 5 16
759 246.26 radiation 40.0 10 < th dose dependent rect. 21 8
762 246.27 radiation 20.0 10 < th dose dependent rect. 21 8
765 246.28 precipitation 0.1 10 < th dose independent rect. 21 8
768 246.28 precipitation 0.1 10 < th dose dependent rect. 21 8
769 246.29 atmosphere 1000.0 90 > th dose independent rect. 10 17
775 246.33 wind 9.0 10 < th dose independent rect. 21 8
787 246.36 humidity 50.0 4320 > th dose independent rect. 4 7
788 246.36 radiation 40.0 30 < th dose dependent rect. 5 5
792 246.40 radiation 40.0 10 < th dose independent rect. 18 16
796 246.44 temperature 25.0 270 > th dose independent rect. 22 10
814 246.49 radiation 40.0 270 < th dose independent rect. 14 18
815 246.51 wind 9.0 270 < th dose independent rect. 8 19
828 246.55 wind 1.0 270 > th dose independent rect. 7 22
829 246.57 wind 9.0 10 < th dose dependent rect. 21 8
839 246.62 temperature 30.0 30 < th dose independent rect. 3 23
842 246.64 humidity 50.0 10 > th dose independent rect. 10 19
844 246.67 atmosphere 995.0 270 > th dose independent rect. 8 19
850 246.68 atmosphere 1005.0 270 > th dose dependent rect. 23 4
891 246.83 atmosphere 995.0 10 > th dose independent rect. 10 19
906 246.92 atmosphere 1000.0 270 > th dose independent rect. 5 1
912 246.93 humidity 50.0 270 > th dose dependent rect. 5 1
961 246.99 atmosphere 995.0 270 > th dose independent rect. 14 18
979 247.05 radiation 1.0 270 < th dose dependent rect. 17 10
987 247.09 precipitation 0.1 270 < th dose independent rect. 5 1
989 247.09 precipitation 0.1 270 < th dose dependent rect. 5 1