Os04g0666900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Kinesin-like calmodulin-binding protein-like protein (Fragment).
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Os04g0666900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Kinesin-like calmodulin-binding protein-like protein (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 43.17 | 0.309 | 9.26 | 0.236 | 0.818 | -0.537 | -0.548 | 5.48 | 0.0263 | 10.7 | 24.89 | 4106 | -- | -- |
| 48.93 | 0.326 | 9.45 | -1.37 | 0.834 | 0.368 | -0.433 | -- | -0.324 | 10.8 | 34.7 | 47520 | -- | -- |
| 44.29 | 0.31 | 9.26 | 0.263 | 0.812 | -0.547 | -- | 5.7 | 0.0397 | 10.7 | 24.8 | 3994 | -- | -- |
| 49.9 | 0.329 | 9.46 | -1.5 | 0.848 | 0.414 | -- | -- | -0.399 | 10.7 | 32.52 | 47520 | -- | -- |
| 83.66 | 0.426 | 9.25 | 0.508 | -- | -0.83 | -- | 6.6 | 0.099 | -- | 24.76 | 3636 | -- | -- |
| 52.31 | 0.339 | 9.43 | -1.06 | 0.838 | -- | -0.678 | -- | -0.26 | 10.7 | -- | -- | -- | -- |
| 54.21 | 0.345 | 9.43 | -1.09 | 0.841 | -- | -- | -- | -0.262 | 10.7 | -- | -- | -- | -- |
| 94.26 | 0.452 | 9.48 | -1.49 | -- | 0.378 | -- | -- | -0.383 | -- | 32.79 | 47520 | -- | -- |
| 62.15 | 0.367 | 9.35 | -- | 0.829 | -0.78 | -- | -- | 0.0921 | 10.7 | 5.409 | 47520 | -- | -- |
| 97.84 | 0.462 | 9.45 | -1.11 | -- | -- | -- | -- | -0.267 | -- | -- | -- | -- | -- |
| 85.6 | 0.433 | 9.4 | -- | 0.849 | -- | -- | -- | -0.141 | 10.8 | -- | -- | -- | -- |
| 104.45 | 0.476 | 9.37 | -- | -- | -0.816 | -- | -- | 0.1 | -- | 4.307 | 47520 | -- | -- |
| 130.21 | 0.533 | 9.42 | -- | -- | -- | -- | -- | -0.144 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 43.04 | temperature | 25 | 4320 | > th | dose dependent | rect. | 13 | 19 |
| 6 | 43.12 | temperature | 25 | 4320 | > th | dose dependent | rect. | 13 | 14 |
| 22 | 43.18 | wind | 3 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 43 | 43.22 | temperature | 25 | 4320 | > th | dose dependent | sin | 15 | NA |
| 57 | 43.25 | wind | 1 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 71 | 43.29 | temperature | 25 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 113 | 43.40 | temperature | 25 | 4320 | > th | dose dependent | no | NA | NA |
| 117 | 43.40 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 21 |
| 118 | 43.40 | temperature | 25 | 4320 | > th | dose dependent | rect. | 4 | 22 |
| 126 | 43.41 | wind | 3 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 133 | 43.41 | temperature | 25 | 4320 | > th | dose dependent | rect. | 24 | 22 |
| 137 | 43.41 | temperature | 25 | 4320 | > th | dose dependent | rect. | 18 | 23 |
| 138 | 43.41 | temperature | 25 | 4320 | > th | dose dependent | rect. | 20 | 23 |
| 143 | 43.42 | radiation | 10 | 10 | < th | dose independent | sin | 0 | NA |
| 229 | 43.49 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 255 | 43.52 | humidity | 70 | 43200 | > th | dose independent | rect. | 18 | 2 |
| 263 | 43.54 | temperature | 25 | 4320 | > th | dose independent | rect. | 11 | 21 |
| 308 | 43.65 | radiation | 10 | 10 | < th | dose dependent | sin | 0 | NA |
| 316 | 43.67 | humidity | 70 | 43200 | > th | dose independent | rect. | 18 | 4 |
| 337 | 43.71 | radiation | 10 | 30 | < th | dose independent | rect. | 7 | 11 |
| 343 | 43.72 | temperature | 25 | 4320 | < th | dose independent | rect. | 11 | 21 |
| 361 | 43.78 | temperature | 25 | 4320 | > th | dose independent | rect. | 24 | 21 |
| 373 | 43.81 | humidity | 80 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 432 | 43.88 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 23 |
| 444 | 43.91 | temperature | 25 | 4320 | > th | dose independent | no | NA | NA |
| 448 | 43.91 | humidity | 70 | 43200 | > th | dose independent | rect. | 17 | 17 |
| 453 | 43.92 | radiation | 20 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 454 | 43.92 | temperature | 25 | 4320 | > th | dose independent | rect. | 24 | 14 |
| 455 | 43.92 | humidity | 70 | 43200 | > th | dose independent | rect. | 18 | 14 |
| 461 | 43.92 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 23 |
| 478 | 43.94 | temperature | 25 | 4320 | > th | dose independent | rect. | 5 | 23 |
| 492 | 43.95 | temperature | 25 | 4320 | < th | dose independent | rect. | 24 | 21 |
| 494 | 43.95 | temperature | 25 | 4320 | > th | dose independent | rect. | 14 | 23 |
| 503 | 43.96 | temperature | 25 | 4320 | > th | dose independent | rect. | 3 | 23 |
| 511 | 43.97 | humidity | 70 | 43200 | < th | dose independent | rect. | 17 | 18 |
| 522 | 43.98 | radiation | 20 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 534 | 43.98 | temperature | 20 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 559 | 44.01 | temperature | 25 | 4320 | > th | dose independent | sin | 5 | NA |
| 573 | 44.02 | temperature | 25 | 43200 | < th | dose independent | rect. | 9 | 5 |
| 584 | 44.03 | temperature | 25 | 43200 | > th | dose independent | rect. | 9 | 4 |
| 605 | 44.04 | temperature | 25 | 4320 | > th | dose independent | rect. | 14 | 7 |
| 616 | 44.04 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 23 |
| 623 | 44.05 | temperature | 25 | 43200 | < th | dose independent | rect. | 10 | 11 |
| 627 | 44.05 | temperature | 25 | 4320 | < th | dose independent | rect. | 24 | 14 |
| 640 | 44.06 | temperature | 25 | 4320 | < th | dose independent | no | NA | NA |
| 645 | 44.06 | temperature | 25 | 4320 | > th | dose independent | rect. | 11 | 11 |
| 656 | 44.06 | temperature | 25 | 4320 | < th | dose independent | rect. | 3 | 23 |
| 657 | 44.06 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 23 |
| 665 | 44.07 | temperature | 25 | 4320 | > th | dose independent | sin | 17 | NA |
| 693 | 44.08 | temperature | 25 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 694 | 44.08 | humidity | 70 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 696 | 44.08 | temperature | 25 | 4320 | > th | dose independent | rect. | 15 | 5 |
| 716 | 44.08 | wind | 1 | 43200 | < th | dose dependent | rect. | 24 | 1 |
| 717 | 44.08 | temperature | 20 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 718 | 44.08 | humidity | 90 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 728 | 44.09 | temperature | 25 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 762 | 44.10 | temperature | 25 | 43200 | > th | dose independent | rect. | 10 | 11 |
| 774 | 44.10 | temperature | 25 | 4320 | < th | dose independent | rect. | 5 | 23 |
| 775 | 44.10 | temperature | 25 | 4320 | < th | dose independent | rect. | 14 | 23 |
| 787 | 44.11 | temperature | 25 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 788 | 44.11 | humidity | 70 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 793 | 44.11 | humidity | 70 | 43200 | < th | dose independent | rect. | 18 | 6 |
| 851 | 44.12 | temperature | 20 | 43200 | > th | dose dependent | rect. | 10 | 11 |
| 860 | 44.13 | temperature | 25 | 4320 | < th | dose independent | sin | 5 | NA |
| 916 | 44.14 | temperature | 25 | 43200 | < th | dose independent | sin | 21 | NA |
| 939 | 44.14 | temperature | 20 | 43200 | > th | dose dependent | sin | 21 | NA |
| 964 | 44.14 | radiation | 20 | 10 | < th | dose dependent | rect. | 12 | 23 |
| 988 | 44.15 | temperature | 20 | 43200 | > th | dose dependent | sin | 19 | NA |