BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0188900 Os01g0188900|AK066235
(147 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0188900 Similar to Ankyrin-like protein-like protein 293 3e-80
Os01g0175400 Ankyrin repeat containing protein 263 4e-71
Os01g0189100 Ubiquitin domain containing protein 243 3e-65
Os12g0600100 Tetratricopeptide-like helical domain containi... 109 7e-25
Os02g0494400 Tetratricopeptide-like helical domain containi... 105 8e-24
Os03g0679800 Tetratricopeptide-like helical domain containi... 102 8e-23
Os02g0494000 Tetratricopeptide region domain containing pro... 102 8e-23
Os02g0493300 Tetratricopeptide-like helical domain containi... 98 2e-21
Os02g0492000 Ankyrin repeat containing protein 96 9e-21
Os12g0599900 Tetratricopeptide region domain containing pro... 95 1e-20
Os03g0680200 Tetratricopeptide-like helical domain containi... 93 7e-20
Os12g0636100 Tetratricopeptide-like helical domain containi... 92 1e-19
Os09g0124800 Protein prenyltransferase domain containing pr... 91 3e-19
Os09g0123500 Tetratricopeptide-like helical domain containi... 87 4e-18
Os05g0103600 Similar to Ankyrin-like protein 86 1e-17
Os12g0634900 Tetratricopeptide-like helical domain containi... 83 6e-17
Os03g0680566 Reverse transcriptase, RNA-dependent DNA polym... 83 9e-17
Os03g0680100 Tetratricopeptide-like helical domain containi... 74 3e-14
Os02g0492700 63 7e-11
>Os01g0188900 Similar to Ankyrin-like protein-like protein
Length = 147
Score = 293 bits (750), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 147/147 (100%), Positives = 147/147 (100%)
Query: 1 VGLRVGPLASLDAVLALNKHGIGVLHAAACQGHLNVCKFLVEELGGDVNIAGKEDITPFM 60
VGLRVGPLASLDAVLALNKHGIGVLHAAACQGHLNVCKFLVEELGGDVNIAGKEDITPFM
Sbjct: 1 VGLRVGPLASLDAVLALNKHGIGVLHAAACQGHLNVCKFLVEELGGDVNIAGKEDITPFM 60
Query: 61 AAAESGDVPTVEYFLDHSGDVTKADVRGCTVLHHAAGTGCCKVTEFLLSKGIPVDIDCGL 120
AAAESGDVPTVEYFLDHSGDVTKADVRGCTVLHHAAGTGCCKVTEFLLSKGIPVDIDCGL
Sbjct: 61 AAAESGDVPTVEYFLDHSGDVTKADVRGCTVLHHAAGTGCCKVTEFLLSKGIPVDIDCGL 120
Query: 121 GTPLFHAANNGKDKTLKILLDHKADAF 147
GTPLFHAANNGKDKTLKILLDHKADAF
Sbjct: 121 GTPLFHAANNGKDKTLKILLDHKADAF 147
>Os01g0175400 Ankyrin repeat containing protein
Length = 188
Score = 263 bits (671), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 129/133 (96%), Positives = 131/133 (98%)
Query: 13 AVLALNKHGIGVLHAAACQGHLNVCKFLVEELGGDVNIAGKEDITPFMAAAESGDVPTVE 72
AVLALNKHGIG+LHA ACQGHLNVCKFLVEELGGDVNIAGKEDITPFMAAAESGDVPTV+
Sbjct: 49 AVLALNKHGIGMLHAVACQGHLNVCKFLVEELGGDVNIAGKEDITPFMAAAESGDVPTVQ 108
Query: 73 YFLDHSGDVTKADVRGCTVLHHAAGTGCCKVTEFLLSKGIPVDIDCGLGTPLFHAANNGK 132
YFLDH GDVTKADVRGCTVLHHAAGTGCCKVTEFLLSKGIPVDIDCGLGTPLFHAANNGK
Sbjct: 109 YFLDHGGDVTKADVRGCTVLHHAAGTGCCKVTEFLLSKGIPVDIDCGLGTPLFHAANNGK 168
Query: 133 DKTLKILLDHKAD 145
DKTLKILLDHKAD
Sbjct: 169 DKTLKILLDHKAD 181
>Os01g0189100 Ubiquitin domain containing protein
Length = 531
Score = 243 bits (621), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 119/143 (83%), Positives = 127/143 (88%)
Query: 3 LRVGPLASLDAVLALNKHGIGVLHAAACQGHLNVCKFLVEELGGDVNIAGKEDITPFMAA 62
L + + + DAVLA GIG+LHAAACQG LNVCKFLVEELGGDVNIAG + +TPFMAA
Sbjct: 41 LEIEKVKAQDAVLAFKNDGIGLLHAAACQGQLNVCKFLVEELGGDVNIAGAQGLTPFMAA 100
Query: 63 AESGDVPTVEYFLDHSGDVTKADVRGCTVLHHAAGTGCCKVTEFLLSKGIPVDIDCGLGT 122
AES DVPTV+YFLDH GDVTKADVRGCTVLHHAAGTGCCKVTEFLLSKGIPVDIDCGLGT
Sbjct: 101 AESDDVPTVKYFLDHGGDVTKADVRGCTVLHHAAGTGCCKVTEFLLSKGIPVDIDCGLGT 160
Query: 123 PLFHAANNGKDKTLKILLDHKAD 145
PL HAAN+ KDKTLKILLDHKAD
Sbjct: 161 PLLHAANDDKDKTLKILLDHKAD 183
>Os12g0600100 Tetratricopeptide-like helical domain containing protein
Length = 387
Score = 109 bits (272), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 61/128 (47%), Positives = 78/128 (60%)
Query: 18 NKHGIGVLHAAACQGHLNVCKFLVEELGGDVNIAGKEDITPFMAAAESGDVPTVEYFLDH 77
+K+G+ LH AA GHL+ CKFLVEE G DVN G + TP AA G+V + Y LDH
Sbjct: 35 DKNGLSALHFAASHGHLDCCKFLVEESGLDVNSVGHKGETPVFYAAIDGNVQVLGYLLDH 94
Query: 78 SGDVTKADVRGCTVLHHAAGTGCCKVTEFLLSKGIPVDIDCGLGTPLFHAANNGKDKTLK 137
GD K + RGCT LH+AA G + LLSKG+ VD G PL AA+ + + +K
Sbjct: 95 GGDPVKPEERGCTPLHNAAENGHDEAVRLLLSKGVHVDPLNYRGAPLHLAASKDRVQAMK 154
Query: 138 ILLDHKAD 145
+LL+H AD
Sbjct: 155 VLLEHGAD 162
>Os02g0494400 Tetratricopeptide-like helical domain containing protein
Length = 371
Score = 105 bits (263), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 64/142 (45%), Positives = 79/142 (55%)
Query: 4 RVGPLASLDAVLALNKHGIGVLHAAACQGHLNVCKFLVEELGGDVNIAGKEDITPFMAAA 63
R+G V G+G LH AA +G L VC++LVEEL DV+ A +E T + A
Sbjct: 31 RIGEAVQAARVRGAPMGGMGALHLAAGKGRLEVCRYLVEELRLDVDDADQEGRTALIIAT 90
Query: 64 ESGDVPTVEYFLDHSGDVTKADVRGCTVLHHAAGTGCCKVTEFLLSKGIPVDIDCGLGTP 123
+ TV+Y LDH DV KA G T LH+A G C + LL+KG VD GTP
Sbjct: 91 LCKHLSTVKYLLDHGADVNKASHDGRTPLHYATHLGDCGTVQLLLAKGACVDTVANRGTP 150
Query: 124 LFHAANNGKDKTLKILLDHKAD 145
L AA+ GKD +KILLDH AD
Sbjct: 151 LHVAASKGKDGAMKILLDHNAD 172
>Os03g0679800 Tetratricopeptide-like helical domain containing protein
Length = 462
Score = 102 bits (255), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 58/135 (42%), Positives = 76/135 (56%), Gaps = 2/135 (1%)
Query: 13 AVLALNKHGIGVLHAAACQGHLNVCKFLVEELGGDVNIAGKED--ITPFMAAAESGDVPT 70
++ ++ G L AA G +++CK+LVEELG DVN D +TP A G T
Sbjct: 113 SLTSVRMEGYEPLFEAASSGKIDLCKYLVEELGFDVNAEANHDSGMTPLFCAVLDGQEIT 172
Query: 71 VEYFLDHSGDVTKADVRGCTVLHHAAGTGCCKVTEFLLSKGIPVDIDCGLGTPLFHAANN 130
V+YFLD D K D G LH AA G + LLSKG VD+ GTPL AA+N
Sbjct: 173 VKYFLDKGADPNKKDAAGFAPLHEAAKKGHVGIARLLLSKGASVDVSSSEGTPLHVAASN 232
Query: 131 GKDKTLKILLDHKAD 145
GK T++ILL+H+A+
Sbjct: 233 GKSSTVQILLEHRAN 247
>Os02g0494000 Tetratricopeptide region domain containing protein
Length = 358
Score = 102 bits (255), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 72/125 (57%)
Query: 21 GIGVLHAAACQGHLNVCKFLVEELGGDVNIAGKEDITPFMAAAESGDVPTVEYFLDHSGD 80
G+G LH AA +G L VC++LVEEL DV+ +E TP + A V TVEY LD D
Sbjct: 63 GMGALHIAASKGRLEVCRYLVEELRLDVDDTDQEGRTPLIIAIVFNHVSTVEYLLDRGAD 122
Query: 81 VTKADVRGCTVLHHAAGTGCCKVTEFLLSKGIPVDIDCGLGTPLFHAANNGKDKTLKILL 140
KA G T +H A G C + + LL+KG VD GTPL AA G+D +KILL
Sbjct: 123 ANKASHNGLTPIHFAICLGECGMVQLLLAKGACVDPVAYCGTPLHVAATEGRDGAMKILL 182
Query: 141 DHKAD 145
DH AD
Sbjct: 183 DHNAD 187
>Os02g0493300 Tetratricopeptide-like helical domain containing protein
Length = 447
Score = 97.8 bits (242), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/112 (49%), Positives = 64/112 (57%)
Query: 34 LNVCKFLVEELGGDVNIAGKEDITPFMAAAESGDVPTVEYFLDHSGDVTKADVRGCTVLH 93
L VC++LVEEL D N + TP A +V TV Y LDH KAD +G T LH
Sbjct: 83 LAVCRYLVEELRVDANAIYDQGETPLAYAVNGANVATVRYLLDHGAHPEKADNKGFTPLH 142
Query: 94 HAAGTGCCKVTEFLLSKGIPVDIDCGLGTPLFHAANNGKDKTLKILLDHKAD 145
AA G C V E LL+KG VD GTPL AA NG+ + +KILLDH AD
Sbjct: 143 FAAEEGYCNVVELLLAKGAQVDSMSVRGTPLHLAATNGQHRVVKILLDHNAD 194
>Os02g0492000 Ankyrin repeat containing protein
Length = 302
Score = 95.9 bits (237), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 58/134 (43%), Positives = 72/134 (53%)
Query: 12 DAVLALNKHGIGVLHAAACQGHLNVCKFLVEELGGDVNIAGKEDITPFMAAAESGDVPTV 71
+AV A+ G G LH AA G +C +LVEEL D+N A + TP + A G V TV
Sbjct: 44 EAVEAVKDRGAGALHQAARNGRTAMCVYLVEELQVDINAANESGATPLIYAVLGGIVYTV 103
Query: 72 EYFLDHSGDVTKADVRGCTVLHHAAGTGCCKVTEFLLSKGIPVDIDCGLGTPLFHAANNG 131
Y LDH + K + +G LH A G C++ + LL KG VD GTPL AA
Sbjct: 104 SYLLDHGANPDKPNEQGRAPLHLAVEQGNCEILKVLLVKGADVDSSSDCGTPLHIAAVKS 163
Query: 132 KDKTLKILLDHKAD 145
D +KILLDH AD
Sbjct: 164 HDGCMKILLDHHAD 177
>Os12g0599900 Tetratricopeptide region domain containing protein
Length = 423
Score = 95.1 bits (235), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 68/126 (53%)
Query: 20 HGIGVLHAAACQGHLNVCKFLVEELGGDVNIAGKEDITPFMAAAESGDVPTVEYFLDHSG 79
+G LH AA GHL +CKFLVEE G DVN TP + AA GD+ + Y LDH G
Sbjct: 37 NGRNALHLAASYGHLEICKFLVEESGLDVNSGSHRGETPILLAACDGDINVLIYLLDHGG 96
Query: 80 DVTKADVRGCTVLHHAAGTGCCKVTEFLLSKGIPVDIDCGLGTPLFHAANNGKDKTLKIL 139
D + G LH+AA G V LLSKG+ VD G PL A N D+ K+L
Sbjct: 97 DPAIPNAGGFMPLHYAAEYGHVDVVRLLLSKGVHVDPLNYSGAPLHLATANDHDQVAKVL 156
Query: 140 LDHKAD 145
L+H AD
Sbjct: 157 LEHGAD 162
>Os03g0680200 Tetratricopeptide-like helical domain containing protein
Length = 472
Score = 92.8 bits (229), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 68/126 (53%), Gaps = 2/126 (1%)
Query: 22 IGVLHAAACQGHLNVCKFLVEELGGDVNIAGKEDI--TPFMAAAESGDVPTVEYFLDHSG 79
+G LH AA G ++ CK LVE+LG D+N +D+ TP A G V YFLD
Sbjct: 76 VGPLHEAASAGKMDTCKHLVEQLGFDINAEASDDLGMTPLACAVSKGKAIAVRYFLDKGA 135
Query: 80 DVTKADVRGCTVLHHAAGTGCCKVTEFLLSKGIPVDIDCGLGTPLFHAANNGKDKTLKIL 139
D K D G T LH+A G + LLSKG VD+ GT L AA++ K +KIL
Sbjct: 136 DPNKQDNIGFTPLHYATKEGYDGLARLLLSKGASVDVISSKGTALHLAASSWKSGIMKIL 195
Query: 140 LDHKAD 145
L+H AD
Sbjct: 196 LEHNAD 201
>Os12g0636100 Tetratricopeptide-like helical domain containing protein
Length = 439
Score = 92.4 bits (228), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/127 (41%), Positives = 72/127 (56%), Gaps = 2/127 (1%)
Query: 21 GIGVLHAAACQGHLNVCKFLVEELGGDVNIAGK-EDITPFMAAAESGDVPTVEYFLDHSG 79
G+ LHA G + ++LVEE+ DVN A + TP A G +P Y LDH
Sbjct: 66 GMNALHALGWLGKVPAYRYLVEEVKMDVNKADTAQGFTPLEHAVYHGRLPATRYLLDHGA 125
Query: 80 DVTKADVRG-CTVLHHAAGTGCCKVTEFLLSKGIPVDIDCGLGTPLFHAANNGKDKTLKI 138
DV + G ++LH AA G +V +FLLS+G+ VD + +GTPL AA G D T+K+
Sbjct: 126 DVHQIRSTGNVSLLHSAAVKGFSEVAKFLLSRGVNVDAESEMGTPLALAAFRGYDSTVKV 185
Query: 139 LLDHKAD 145
LL+H AD
Sbjct: 186 LLEHNAD 192
>Os09g0124800 Protein prenyltransferase domain containing protein
Length = 439
Score = 90.9 bits (224), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 69/125 (55%), Gaps = 1/125 (0%)
Query: 21 GIGVLHAAACQGHLNVCKFLVEELGGDVNIAGKEDITPFMAAAESGDVPTVEYFLDHSGD 80
G LH AA +G ++V +LVE+L DVN TP +A G + Y LDH D
Sbjct: 56 GSRALHLAATEGRMDVLTYLVEDLRLDVNQTNDRGETPLFLSAFFGRTASTRYLLDHGAD 115
Query: 81 VTKADVRGCTVLHHAAGTGCCKVTEFLLSKGIPVDIDCGLGTPLFHAANNGKDKTLKILL 140
G + LH AAG G C++ E LLS+GI + D GTPL AA +G+ T+KILL
Sbjct: 116 PMIVGKSG-SPLHAAAGKGHCEIVELLLSRGIGIVFDSLYGTPLHTAAAHGQCSTMKILL 174
Query: 141 DHKAD 145
DH AD
Sbjct: 175 DHHAD 179
>Os09g0123500 Tetratricopeptide-like helical domain containing protein
Length = 428
Score = 87.0 bits (214), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 68/125 (54%), Gaps = 2/125 (1%)
Query: 21 GIGVLHAAACQGHLNVCKFLVEELGGDVNIAGKEDITPFMAAAESGDVPTVEYFLDHSGD 80
G LH AA +G ++V ++LVE+L VN + TP ++ G Y LDH D
Sbjct: 48 GNRALHLAAARGSMDVLRYLVEDLHLSVNQFNAKGETPLCLSSIHGRAAATRYLLDHGSD 107
Query: 81 VTKADVRGCTVLHHAAGTGCCKVTEFLLSKGIPVDIDCGLGTPLFHAANNGKDKTLKILL 140
T + H AA G C++ E LS+G+ VD+D GTPL AA NG+ T+KILL
Sbjct: 108 PTID--KSVLPFHAAATKGHCEIVELFLSRGVDVDLDSITGTPLLTAAMNGQYSTMKILL 165
Query: 141 DHKAD 145
+H AD
Sbjct: 166 EHHAD 170
>Os05g0103600 Similar to Ankyrin-like protein
Length = 460
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 66/121 (54%)
Query: 24 VLHAAACQGHLNVCKFLVEELGGDVNIAGKEDITPFMAAAESGDVPTVEYFLDHSGDVTK 83
LH AA +G +VC FL+ +L V+ + TP + A + TV Y L H D +
Sbjct: 58 ALHFAAREGRTHVCHFLISDLALPVDPKDDDGETPLIHATRQAHLQTVTYLLHHGADPSV 117
Query: 84 ADVRGCTVLHHAAGTGCCKVTEFLLSKGIPVDIDCGLGTPLFHAANNGKDKTLKILLDHK 143
A G T LHHAAG G + + LSKG+ V+ + GTPL AA +G+ + +K+LL H
Sbjct: 118 ASSLGATPLHHAAGIGNLDLMKLFLSKGVDVESESDAGTPLIWAAGHGQQEAVKLLLQHD 177
Query: 144 A 144
A
Sbjct: 178 A 178
>Os12g0634900 Tetratricopeptide-like helical domain containing protein
Length = 429
Score = 83.2 bits (204), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 52/130 (40%), Positives = 71/130 (54%), Gaps = 9/130 (6%)
Query: 20 HGIGVLHAAACQGHLNVCKFLVEELGGDVN----IAGKEDITPFMAAAESGDVPTVEYFL 75
HG+ LHAA L+V ++L+E DVN G++ TP A GD+P+V Y +
Sbjct: 60 HGMNALHAARS---LHVYRYLLEVANMDVNKPDTTPGRK--TPLERAIAGGDLPSVRYLI 114
Query: 76 DHSGDVTKADVRGCTVLHHAAGTGCCKVTEFLLSKGIPVDIDCGLGTPLFHAANNGKDKT 135
DH D+ T LH AA G ++ + LLS+G VD GTPL AA G + T
Sbjct: 115 DHGADIHHEREGNITFLHSAAKKGRTEIVKLLLSRGAHVDGKSDHGTPLHFAAIKGYEST 174
Query: 136 LKILLDHKAD 145
+KILL+H+AD
Sbjct: 175 VKILLEHQAD 184
>Os03g0680566 Reverse transcriptase, RNA-dependent DNA polymerase family protein
Length = 1836
Score = 82.8 bits (203), Expect = 9e-17, Method: Composition-based stats.
Identities = 52/131 (39%), Positives = 65/131 (49%), Gaps = 1/131 (0%)
Query: 17 LNKHGIGVLHAAACQGHLNVCKFLVEELGGDVNIAGKED-ITPFMAAAESGDVPTVEYFL 75
+N G G+L AA G + V ++ VEELG DVN D +T +AA G+ V Y L
Sbjct: 64 MNIDGNGLLQVAAHLGKIEVIRYFVEELGFDVNAGCLSDGVTALASAAMFGEAYVVRYLL 123
Query: 76 DHSGDVTKADVRGCTVLHHAAGTGCCKVTEFLLSKGIPVDIDCGLGTPLFHAANNGKDKT 135
+H D K D G LH AA G +V LLS G I GTPL A +
Sbjct: 124 EHGADPNKTDETGSVALHFAAKNGYEEVVRLLLSSGARTGIVVAHGTPLHIAVFYRRIGV 183
Query: 136 LKILLDHKADA 146
+KILLDH D+
Sbjct: 184 VKILLDHHVDS 194
>Os03g0680100 Tetratricopeptide-like helical domain containing protein
Length = 505
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 65/138 (47%)
Query: 8 LASLDAVLALNKHGIGVLHAAACQGHLNVCKFLVEELGGDVNIAGKEDITPFMAAAESGD 67
+A D +A K V+ A C+ L+ + + + I +TP A G
Sbjct: 152 MACTDGDVARLKGNAIVMGAVVCEASLDRVRNRLYLTMKSLTIVTALGMTPLFCAVLDGQ 211
Query: 68 VPTVEYFLDHSGDVTKADVRGCTVLHHAAGTGCCKVTEFLLSKGIPVDIDCGLGTPLFHA 127
TV+YFLD D K D G LH AA G + LLSKG VD+ GTPL A
Sbjct: 212 EITVKYFLDKGADPNKKDAEGFAPLHEAAKIGNVGIARLLLSKGASVDVSSSEGTPLHVA 271
Query: 128 ANNGKDKTLKILLDHKAD 145
A+NGK + ILL+H A+
Sbjct: 272 ASNGKSSIVLILLEHHAN 289
>Os02g0492700
Length = 165
Score = 63.2 bits (152), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 44/81 (54%)
Query: 20 HGIGVLHAAACQGHLNVCKFLVEELGGDVNIAGKEDITPFMAAAESGDVPTVEYFLDHSG 79
+G+G LH AA +G L VC +L+EEL D++ T A SG+ V Y LDH
Sbjct: 85 NGVGALHLAAGRGSLPVCGYLLEELRVDIDAVEDRGETALTFAINSGNADMVRYLLDHGA 144
Query: 80 DVTKADVRGCTVLHHAAGTGC 100
D K + G TVLH A+G G
Sbjct: 145 DTEKLNNDGLTVLHFASGEGV 165
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.140 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,358,891
Number of extensions: 229017
Number of successful extensions: 779
Number of sequences better than 1.0e-10: 22
Number of HSP's gapped: 747
Number of HSP's successfully gapped: 22
Length of query: 147
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 56
Effective length of database: 12,284,327
Effective search space: 687922312
Effective search space used: 687922312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 151 (62.8 bits)