Os01g0189100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ubiquitin domain containing protein.
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Os01g0189100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ubiquitin domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 216.4 | 0.691 | 4.9 | 1.9 | 2.11 | 2.38 | 3.25 | -1.98 | 2.45 | 18.9 | 25.4 | 328 | -- | -- |
| 217.38 | 0.687 | 4.87 | 2.13 | 2.13 | 2.2 | 3.02 | -- | 2.5 | 18.9 | 25.33 | 328 | -- | -- |
| 239.96 | 0.721 | 4.83 | 2.13 | 2.07 | 2.35 | -- | 0.589 | 2.55 | 18.8 | 25.35 | 329 | -- | -- |
| 239.57 | 0.721 | 4.86 | 2.06 | 2.08 | 2.36 | -- | -- | 2.54 | 18.8 | 25.62 | 353 | -- | -- |
| 377.09 | 0.904 | 4.89 | 1.46 | -- | 4.15 | -- | -1.96 | 2.23 | -- | 24.9 | 401 | -- | -- |
| 297.88 | 0.809 | 4.86 | 2.5 | 3.08 | -- | 3.96 | -- | 2.65 | 18.4 | -- | -- | -- | -- |
| 336.45 | 0.859 | 4.85 | 2.45 | 3.1 | -- | -- | -- | 2.66 | 18.3 | -- | -- | -- | -- |
| 378.21 | 0.906 | 4.86 | 1.72 | -- | 3.98 | -- | -- | 2.3 | -- | 24.88 | 414 | -- | -- |
| 345.76 | 0.866 | 4.95 | -- | 1.82 | 2.83 | -- | -- | 2.11 | 18.9 | 23.87 | 351 | -- | -- |
| 835.69 | 1.35 | 4.79 | 2.37 | -- | -- | -- | -- | 2.59 | -- | -- | -- | -- | -- |
| 494.34 | 1.04 | 4.91 | -- | 3.07 | -- | -- | -- | 2.39 | 18.4 | -- | -- | -- | -- |
| 453.37 | 0.992 | 4.92 | -- | -- | 4.22 | -- | -- | 2.05 | -- | 24.6 | 425 | -- | -- |
| 983.23 | 1.46 | 4.85 | -- | -- | -- | -- | -- | 2.33 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 214.30 | temperature | 15 | 270 | > th | dose dependent | rect. | 24 | 18 |
| 3 | 214.80 | temperature | 30 | 270 | < th | dose independent | rect. | 15 | 23 |
| 5 | 215.20 | temperature | 25 | 270 | > th | dose dependent | sin | 21 | NA |
| 6 | 215.36 | temperature | 25 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 7 | 215.60 | temperature | 25 | 90 | > th | dose dependent | sin | 18 | NA |
| 10 | 215.73 | temperature | 25 | 270 | > th | dose dependent | rect. | 7 | 12 |
| 13 | 215.79 | temperature | 25 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 15 | 215.82 | temperature | 25 | 270 | > th | dose dependent | rect. | 21 | 22 |
| 44 | 216.68 | temperature | 25 | 270 | > th | dose dependent | rect. | 7 | 21 |
| 94 | 217.52 | temperature | 25 | 270 | > th | dose dependent | no | NA | NA |
| 177 | 219.08 | temperature | 15 | 270 | > th | dose dependent | rect. | 9 | 10 |
| 206 | 221.07 | temperature | 30 | 270 | < th | dose independent | rect. | 3 | 23 |
| 217 | 221.63 | temperature | 15 | 10 | > th | dose dependent | rect. | 2 | 18 |
| 218 | 221.70 | temperature | 30 | 270 | < th | dose independent | rect. | 9 | 14 |
| 264 | 223.03 | temperature | 30 | 270 | > th | dose independent | rect. | 12 | 23 |
| 274 | 223.40 | temperature | 30 | 270 | < th | dose independent | sin | 19 | NA |
| 288 | 223.97 | temperature | 30 | 270 | < th | dose independent | no | NA | NA |
| 289 | 223.98 | temperature | 30 | 270 | < th | dose independent | rect. | 6 | 17 |
| 291 | 224.02 | temperature | 30 | 270 | > th | dose independent | sin | 21 | NA |
| 300 | 224.23 | temperature | 30 | 270 | > th | dose independent | no | NA | NA |
| 301 | 224.23 | temperature | 30 | 270 | > th | dose independent | rect. | 8 | 11 |
| 434 | 224.68 | temperature | 10 | 270 | > th | dose dependent | sin | 22 | NA |
| 448 | 224.95 | temperature | 25 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 469 | 225.47 | temperature | 30 | 270 | < th | dose independent | rect. | 5 | 19 |
| 530 | 226.29 | temperature | 30 | 720 | < th | dose independent | sin | 10 | NA |
| 582 | 227.08 | temperature | 30 | 1440 | < th | dose independent | rect. | 19 | 16 |
| 625 | 227.35 | temperature | 30 | 270 | > th | dose independent | rect. | 17 | 23 |
| 637 | 227.40 | temperature | 30 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 647 | 227.48 | temperature | 30 | 720 | > th | dose independent | rect. | 16 | 20 |
| 656 | 227.60 | temperature | 30 | 1440 | < th | dose independent | rect. | 10 | 1 |
| 661 | 227.68 | temperature | 30 | 1440 | < th | dose independent | rect. | 7 | 4 |
| 668 | 227.74 | temperature | 30 | 1440 | > th | dose independent | rect. | 8 | 3 |
| 716 | 228.06 | temperature | 30 | 720 | < th | dose independent | rect. | 8 | 23 |
| 724 | 228.12 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 16 |
| 729 | 228.15 | temperature | 30 | 1440 | > th | dose dependent | rect. | 8 | 3 |
| 745 | 228.17 | temperature | 30 | 720 | > th | dose independent | sin | 10 | NA |
| 748 | 228.17 | humidity | 50 | 270 | > th | dose dependent | rect. | 8 | 15 |
| 814 | 228.75 | temperature | 25 | 720 | > th | dose dependent | sin | 7 | NA |
| 830 | 228.97 | humidity | 70 | 90 | > th | dose independent | rect. | 9 | 16 |
| 875 | 229.43 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 984 | 230.23 | humidity | 70 | 270 | > th | dose independent | rect. | 17 | 20 |