Os02g0494000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tetratricopeptide region domain containing protein.
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Os02g0494000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Tetratricopeptide region domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 181.18 | 0.632 | 5.96 | 0.891 | 1.48 | -0.571 | -0.896 | -0.309 | 1.97 | 20.7 | 30.02 | 1266 | -- | -- |
| 181.24 | 0.627 | 5.96 | 0.932 | 1.47 | -0.599 | -0.898 | -- | 1.99 | 20.7 | 30.01 | 1274 | -- | -- |
| 183.81 | 0.631 | 5.97 | 0.875 | 1.48 | -0.55 | -- | -0.545 | 1.97 | 20.7 | 30.07 | 1256 | -- | -- |
| 183.88 | 0.632 | 5.95 | 0.965 | 1.5 | -0.598 | -- | -- | 1.99 | 20.7 | 30.02 | 1257 | -- | -- |
| 305.66 | 0.814 | 5.93 | 0.89 | -- | -0.472 | -- | -0.366 | 1.95 | -- | 30.3 | 1410 | -- | -- |
| 199.89 | 0.663 | 5.93 | 0.767 | 1.45 | -- | -0.94 | -- | 2.07 | 20.5 | -- | -- | -- | -- |
| 202.69 | 0.667 | 5.93 | 0.797 | 1.45 | -- | -- | -- | 2.07 | 20.4 | -- | -- | -- | -- |
| 305.93 | 0.815 | 5.92 | 0.951 | -- | -0.499 | -- | -- | 1.93 | -- | 30.3 | 1412 | -- | -- |
| 208.88 | 0.673 | 5.94 | -- | 1.55 | -0.497 | -- | -- | 1.99 | 20.7 | 29.39 | 2636 | -- | -- |
| 320.57 | 0.837 | 5.89 | 0.79 | -- | -- | -- | -- | 2.06 | -- | -- | -- | -- | -- |
| 219.43 | 0.693 | 5.95 | -- | 1.45 | -- | -- | -- | 1.98 | 20.5 | -- | -- | -- | -- |
| 329.46 | 0.845 | 5.94 | -- | -- | -0.409 | -- | -- | 1.87 | -- | 30.4 | 2805 | -- | -- |
| 337.02 | 0.857 | 5.91 | -- | -- | -- | -- | -- | 1.97 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 176.90 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 3 | 177.22 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 3 | 5 |
| 4 | 177.37 | wind | 1.0 | 270 | < th | dose independent | rect. | 2 | 3 |
| 5 | 177.89 | wind | 1.0 | 270 | < th | dose independent | rect. | 4 | 2 |
| 12 | 178.82 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 2 | 5 |
| 14 | 178.88 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 3 | 4 |
| 16 | 178.93 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 18 | 178.96 | wind | 5.0 | 90 | < th | dose dependent | rect. | 3 | 5 |
| 19 | 178.97 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 3 | 4 |
| 36 | 179.37 | wind | 3.0 | 43200 | < th | dose independent | rect. | 3 | 3 |
| 49 | 179.49 | wind | 3.0 | 43200 | > th | dose independent | rect. | 2 | 4 |
| 76 | 179.65 | wind | 3.0 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 88 | 179.73 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 11 | 2 |
| 95 | 179.78 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 18 | 18 |
| 97 | 179.79 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 106 | 179.86 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 18 | 18 |
| 132 | 180.07 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 10 | 10 |
| 137 | 180.11 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 18 | 14 |
| 139 | 180.12 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 10 | 10 |
| 193 | 180.19 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 16 | 16 |
| 195 | 180.19 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 16 | 16 |
| 294 | 180.42 | humidity | 70.0 | 14400 | < th | dose independent | sin | 18 | NA |
| 313 | 180.48 | humidity | 70.0 | 14400 | > th | dose independent | sin | 20 | NA |
| 341 | 180.55 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 18 | 14 |
| 354 | 180.57 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 18 | 22 |
| 368 | 180.59 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 17 | 23 |
| 407 | 180.64 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 460 | 180.69 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 17 | 2 |
| 464 | 180.70 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 18 | 7 |
| 466 | 180.70 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 18 | 9 |
| 490 | 180.71 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 18 | 3 |
| 495 | 180.72 | humidity | 70.0 | 14400 | > th | dose independent | no | NA | NA |
| 557 | 180.73 | humidity | 70.0 | 14400 | < th | dose independent | no | NA | NA |
| 599 | 180.73 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 14 | 23 |
| 613 | 180.74 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 14 | 23 |
| 682 | 180.82 | humidity | 60.0 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 749 | 180.88 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 8 | 8 |
| 771 | 180.91 | radiation | 20.0 | 1440 | > th | dose independent | rect. | 16 | 15 |
| 893 | 181.06 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 3 | 5 |
| 915 | 181.07 | humidity | 60.0 | 14400 | > th | dose dependent | rect. | 11 | 4 |
| 987 | 181.13 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 18 | 12 |
| 993 | 181.15 | wind | 5.0 | 90 | < th | dose independent | rect. | 3 | 5 |