FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0679800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Tetratricopeptide-like helical domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.53 (0.0635) R2 : 0.617
β1 : -4.1 (0.236) R2dD : 0.287 R2D : 0.154
β2 : 5.5 (0.305) R2dC : 0.988 R2C : -0.0355
β3 : 3.37 (0.311) R2dE : 0.366 R2E : -0.721
β4 : -13.7 (1.3) R2dD*C : 0.291 R2D*C : -0.106
β5 : -9.34 (1.32) R2dD*E : 0.134 R2D*E : -0.283
γ1 : -1.03 (0.139) R2dN8 : 0.0692 R2N8 : -0.0398
σ : 1.16
deviance : 612.08
__
_____
C
peak time of C : 18
E
wheather : atmosphere
threshold : 994.5
memory length : 247
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 23
open length of G : 8.33

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
612.08 1.16 4.53 -4.1 5.5 3.37 -13.7 -9.34 -1.03 18 994.5 247 23 8.33
690.5 1.22 4.56 -3.61 6.68 4.15 -8.07 -- -0.882 18.1 989.5 313 22 9.62
774.92 1.3 4.5 -3.64 4.46 2.81 -- 0.703 -0.836 18.2 1001 347 22.7 7.05
763.41 1.29 4.53 -3.55 6.13 3.83 -- -- -0.95 17.8 988.9 288 22.2 8.97
1184.89 1.6 4.08 -1.64 -- 1.97 -- -1.78 0.234 -- 1002 47520 21.3 4.7
770.16 1.3 4.38 -3.63 2.72 -- -6.3 -- -0.493 19.1 -- -- -- --
874.49 1.38 4.38 -3.5 2.72 -- -- -- -0.505 19 -- -- -- --
1178.92 1.6 4.43 -2.89 -- 3.43 -- -- -0.943 -- 967 4165 23 9.78
1091.61 1.54 4.46 -- 6.13 3.73 -- -- -0.565 17.8 988.9 291 22.2 9.16
1262.03 1.66 4.32 -3.56 -- -- -- -- -0.556 -- -- -- -- --
1197.8 1.62 4.3 -- 2.75 -- -- -- -0.115 18.9 -- -- -- --
1225.9 1.63 4.09 -- -- 3.69 -- -- 0.457 -- 971.3 47520 22 7.98
1595.88 1.86 4.24 -- -- -- -- -- -0.161 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 616.25 atmosphere 995.0 270 > th dose dependent rect. 23 8
5 627.22 temperature 15.0 30 > th dose independent rect. 20 17
7 631.81 temperature 15.0 270 > th dose independent rect. 17 7
8 631.88 wind 7.0 270 < th dose independent rect. 7 16
11 633.07 temperature 15.0 10 > th dose independent rect. 20 6
15 635.37 radiation 40.0 270 < th dose dependent rect. 12 5
17 638.62 temperature 20.0 270 > th dose independent rect. 12 6
18 639.24 radiation 30.0 270 < th dose independent rect. 12 5
19 639.32 temperature 15.0 270 > th dose independent rect. 18 18
20 639.52 temperature 10.0 270 > th dose dependent rect. 18 6
22 640.23 temperature 15.0 30 > th dose independent rect. 18 8
27 642.33 wind 1.0 270 > th dose dependent rect. 12 6
28 642.34 atmosphere 1015.0 270 < th dose dependent rect. 12 6
31 642.76 radiation 40.0 10 < th dose independent rect. 13 7
33 643.00 temperature 10.0 10 > th dose dependent rect. 20 6
35 643.30 wind 1.0 30 > th dose dependent rect. 13 7
43 644.67 temperature 15.0 10 > th dose independent rect. 20 19
50 645.51 radiation 40.0 90 < th dose independent rect. 12 7
55 645.96 temperature 15.0 14400 > th dose independent rect. 8 2
56 646.00 temperature 15.0 10 > th dose independent rect. 9 17
61 646.30 atmosphere 1015.0 30 < th dose dependent rect. 13 7
65 646.74 temperature 10.0 270 > th dose dependent rect. 18 18
67 647.00 wind 9.0 270 < th dose independent rect. 16 23
69 647.18 temperature 15.0 14400 > th dose independent rect. 5 6
71 647.53 wind 5.0 30 > th dose dependent rect. 15 5
74 647.88 radiation 40.0 90 < th dose dependent rect. 12 7
79 648.34 temperature 15.0 14400 > th dose independent rect. 4 9
80 648.35 temperature 10.0 30 > th dose dependent rect. 20 17
93 649.29 temperature 15.0 14400 < th dose independent rect. 9 1
95 649.33 wind 1.0 270 > th dose independent rect. 12 17
96 649.35 temperature 20.0 30 > th dose independent rect. 13 7
102 649.72 temperature 20.0 14400 < th dose dependent rect. 11 3
104 649.87 temperature 15.0 14400 < th dose independent rect. 4 7
117 650.54 wind 9.0 270 < th dose independent rect. 18 18
128 650.81 temperature 15.0 14400 > th dose independent rect. 6 4
140 651.49 temperature 15.0 270 > th dose independent rect. 7 16
145 651.62 wind 5.0 30 > th dose independent rect. 15 5
150 651.82 atmosphere 1010.0 10 < th dose independent rect. 20 6
153 651.85 radiation 40.0 270 < th dose independent rect. 12 17
154 651.87 humidity 50.0 270 > th dose independent rect. 18 18
165 652.15 precipitation 0.1 270 < th dose independent rect. 18 18
166 652.15 precipitation 0.1 270 < th dose dependent rect. 18 18
185 652.52 humidity 90.0 270 < th dose independent rect. 12 6
187 652.57 wind 7.0 270 < th dose independent rect. 16 8
196 652.83 temperature 15.0 14400 > th dose independent sin 5 NA
200 652.87 temperature 10.0 270 > th dose independent rect. 12 6
202 652.87 atmosphere 1015.0 270 < th dose independent rect. 12 6
204 652.87 atmosphere 995.0 270 > th dose independent rect. 18 18
216 653.10 wind 1.0 14400 < th dose independent rect. 22 7
217 653.14 wind 1.0 270 > th dose independent rect. 12 6
219 653.22 temperature 20.0 14400 < th dose dependent rect. 9 11
223 653.26 temperature 20.0 14400 > th dose independent rect. 13 1
229 653.29 radiation 40.0 10 < th dose dependent rect. 13 7
233 653.36 atmosphere 995.0 270 > th dose independent rect. 12 6
234 653.38 wind 1.0 270 > th dose independent rect. 23 8
241 653.54 temperature 20.0 30 > th dose independent rect. 15 5
264 653.87 wind 7.0 270 < th dose independent rect. 16 21
268 653.99 temperature 20.0 14400 < th dose independent rect. 13 1
272 654.09 humidity 90.0 30 < th dose independent rect. 13 7
294 654.34 temperature 20.0 14400 < th dose dependent rect. 9 1
298 654.42 humidity 50.0 30 > th dose independent rect. 20 17
303 654.56 wind 1.0 10 > th dose independent rect. 13 7
306 654.57 wind 5.0 30 > th dose dependent rect. 15 17
311 654.64 precipitation 0.1 270 < th dose independent rect. 12 6
312 654.64 precipitation 0.1 270 < th dose dependent rect. 12 6
345 655.05 temperature 20.0 14400 < th dose dependent rect. 18 2
353 655.18 wind 9.0 30 < th dose independent rect. 20 17
358 655.25 temperature 10.0 10 > th dose independent rect. 13 7
360 655.25 atmosphere 1010.0 10 < th dose independent rect. 13 7
363 655.25 atmosphere 995.0 10 > th dose independent rect. 20 17
368 655.31 temperature 20.0 270 > th dose independent rect. 15 1
378 655.36 temperature 15.0 14400 < th dose independent rect. 5 1
389 655.48 atmosphere 995.0 10 > th dose independent rect. 13 7
393 655.51 temperature 20.0 14400 < th dose dependent sin 21 NA
399 655.56 temperature 10.0 1440 > th dose independent rect. 14 7
402 655.56 temperature 10.0 1440 > th dose independent rect. 21 17
405 655.56 atmosphere 995.0 1440 > th dose independent rect. 21 17
407 655.57 radiation 20.0 43200 < th dose dependent rect. 19 8
408 655.60 wind 5.0 90 > th dose independent rect. 13 7
433 655.93 precipitation 0.1 30 < th dose independent rect. 20 17
434 655.93 precipitation 0.1 30 < th dose dependent rect. 20 17
443 655.98 precipitation 0.1 10 < th dose independent rect. 13 7
445 655.98 precipitation 0.1 10 < th dose dependent rect. 13 7
458 656.10 wind 7.0 30 < th dose independent rect. 18 8
474 656.31 temperature 15.0 14400 < th dose independent sin 6 NA
549 657.16 humidity 50.0 270 > th dose independent rect. 12 6
561 657.31 temperature 10.0 10 > th dose dependent rect. 20 19
562 657.34 wind 5.0 30 < th dose independent rect. 16 10
567 657.39 wind 1.0 43200 > th dose independent rect. 16 13
578 657.52 temperature 15.0 14400 > th dose independent rect. 23 1
580 657.54 temperature 15.0 14400 < th dose independent rect. 2 2
616 657.86 temperature 20.0 14400 < th dose independent rect. 12 7
621 657.90 atmosphere 1015.0 270 < th dose independent rect. 23 8
677 658.46 wind 1.0 43200 < th dose independent rect. 16 13
680 658.48 precipitation 0.1 270 < th dose independent rect. 7 16
682 658.48 precipitation 0.1 270 < th dose dependent rect. 7 16
687 658.55 radiation 10.0 43200 < th dose dependent rect. 21 6
704 658.75 atmosphere 1000.0 270 > th dose independent rect. 23 8
713 658.81 wind 9.0 270 < th dose independent rect. 5 7
720 658.92 temperature 30.0 30 < th dose independent rect. 18 8
721 658.93 precipitation 0.1 270 < th dose independent rect. 23 8
722 658.93 precipitation 0.1 270 < th dose dependent rect. 23 8
733 659.03 wind 1.0 14400 < th dose dependent rect. 22 12
747 659.17 radiation 1.0 14400 < th dose independent rect. 9 1
751 659.21 atmosphere 995.0 10 > th dose dependent rect. 2 7
758 659.29 wind 1.0 270 > th dose independent rect. 24 17
764 659.34 wind 1.0 14400 < th dose dependent rect. 2 8
780 659.51 radiation 1.0 14400 > th dose independent rect. 9 1
789 659.61 wind 9.0 270 < th dose independent rect. 23 8
791 659.62 temperature 10.0 270 > th dose independent rect. 23 8
792 659.62 temperature 30.0 270 < th dose independent rect. 23 8
793 659.62 humidity 50.0 270 > th dose independent rect. 23 8
796 659.62 radiation 40.0 270 < th dose independent rect. 23 8
806 659.71 temperature 10.0 270 > th dose independent rect. 5 7
807 659.71 atmosphere 995.0 270 > th dose independent rect. 5 7
808 659.71 atmosphere 1015.0 270 < th dose independent rect. 5 7
809 659.71 temperature 10.0 270 > th dose independent rect. 12 17
819 659.78 humidity 50.0 270 > th dose independent rect. 5 7
825 659.89 precipitation 0.1 270 < th dose independent rect. 5 7
827 659.89 precipitation 0.1 270 < th dose dependent rect. 5 7
836 659.94 wind 9.0 270 < th dose dependent rect. 7 16
876 660.36 radiation 1.0 1440 < th dose dependent rect. 19 8
893 660.52 radiation 1.0 270 > th dose independent rect. 17 20
895 660.54 temperature 15.0 14400 < th dose independent rect. 23 1
916 660.72 atmosphere 995.0 270 > th dose independent rect. 12 17
945 661.01 temperature 10.0 1440 > th dose independent rect. 19 8
948 661.01 temperature 30.0 1440 < th dose independent rect. 19 8
952 661.01 humidity 50.0 1440 > th dose independent rect. 19 8
954 661.01 atmosphere 995.0 1440 > th dose independent rect. 19 8
955 661.01 radiation 1.0 1440 < th dose independent rect. 19 8
975 661.01 temperature 10.0 1440 > th dose independent rect. 3 16
985 661.05 wind 1.0 14400 < th dose independent rect. 20 13
990 661.09 atmosphere 1010.0 270 < th dose independent rect. 18 6
996 661.13 precipitation 0.1 270 < th dose independent rect. 12 17
997 661.13 precipitation 0.1 270 < th dose dependent rect. 12 17