Os03g0680200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tetratricopeptide-like helical domain containing protein.
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Os03g0680200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Tetratricopeptide-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 373.15 | 0.908 | 3.15 | 0.631 | 0.186 | -5.43 | 0.436 | -13 | 0.139 | 12.5 | 8.8 | 30 | -- | -- |
| 376.67 | 0.904 | 3.1 | 0.597 | 0.177 | -4.6 | 0.274 | -- | 0.136 | 12.8 | 10.1 | 31 | -- | -- |
| 373.6 | 0.9 | 3.15 | 0.651 | 0.201 | -5.63 | -- | -13.9 | 0.137 | 10.9 | 8.787 | 29 | -- | -- |
| 374.66 | 0.902 | 3.12 | 0.482 | 0.21 | -3.41 | -- | -- | 0.108 | 11.8 | 10.04 | 31 | -- | -- |
| 376.08 | 0.903 | 3.15 | 0.649 | -- | -5.66 | -- | -13.7 | 0.137 | -- | 8.795 | 29 | -- | -- |
| 394.66 | 0.931 | 3.11 | 0.389 | 0.233 | -- | 0.498 | -- | 0.0957 | 12.8 | -- | -- | -- | -- |
| 395.62 | 0.931 | 3.1 | 0.406 | 0.234 | -- | -- | -- | 0.0975 | 12.1 | -- | -- | -- | -- |
| 376.91 | 0.904 | 3.1 | 0.487 | -- | -3.08 | -- | -- | 0.13 | -- | 9.967 | 31 | -- | -- |
| 380.61 | 0.909 | 3.11 | -- | 0.209 | -3.24 | -- | -- | 0.0736 | 11 | 10.04 | 31 | -- | -- |
| 399.06 | 0.933 | 3.11 | 0.399 | -- | -- | -- | -- | 0.094 | -- | -- | -- | -- | -- |
| 399.97 | 0.936 | 3.11 | -- | 0.228 | -- | -- | -- | 0.0522 | 12 | -- | -- | -- | -- |
| 383.11 | 0.912 | 3.11 | -- | -- | -2.93 | -- | -- | 0.0744 | -- | 9.973 | 31 | -- | -- |
| 403.25 | 0.937 | 3.12 | -- | -- | -- | -- | -- | 0.0498 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 369.43 | wind | 9 | 30 | > th | dose dependent | rect. | 17 | 19 |
| 13 | 373.03 | wind | 9 | 30 | < th | dose independent | sin | 18 | NA |
| 17 | 374.06 | temperature | 25 | 10 | < th | dose dependent | rect. | 13 | 3 |
| 27 | 375.03 | wind | 9 | 30 | < th | dose independent | rect. | 13 | 23 |
| 30 | 375.16 | humidity | 50 | 4320 | < th | dose dependent | rect. | 12 | 1 |
| 34 | 375.44 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 22 | 2 |
| 35 | 375.44 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 22 | 2 |
| 46 | 375.63 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 50 | 375.70 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 21 | 3 |
| 66 | 375.97 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 78 | 376.08 | humidity | 50 | 4320 | < th | dose dependent | rect. | 12 | 6 |
| 100 | 376.16 | wind | 9 | 30 | > th | dose independent | rect. | 17 | 19 |
| 107 | 376.19 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 12 | 7 |
| 115 | 376.25 | wind | 9 | 30 | < th | dose independent | no | NA | NA |
| 150 | 376.39 | wind | 9 | 10 | > th | dose dependent | sin | 9 | NA |
| 158 | 376.44 | temperature | 25 | 270 | < th | dose dependent | rect. | 12 | 1 |
| 185 | 376.64 | wind | 9 | 30 | > th | dose dependent | rect. | 11 | 7 |
| 186 | 376.64 | humidity | 50 | 4320 | < th | dose dependent | rect. | 16 | 23 |
| 213 | 376.74 | humidity | 50 | 4320 | < th | dose independent | rect. | 14 | 1 |
| 236 | 376.85 | humidity | 50 | 4320 | < th | dose dependent | sin | 21 | NA |
| 257 | 376.87 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 2 |
| 289 | 376.94 | humidity | 50 | 4320 | < th | dose dependent | no | NA | NA |
| 495 | 377.08 | humidity | 60 | 90 | < th | dose dependent | rect. | 9 | 1 |
| 513 | 377.13 | temperature | 25 | 90 | < th | dose independent | rect. | 12 | 5 |
| 542 | 377.22 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 2 |
| 566 | 377.32 | temperature | 25 | 270 | < th | dose independent | rect. | 12 | 2 |
| 570 | 377.33 | temperature | 25 | 10 | < th | dose independent | rect. | 13 | 3 |
| 616 | 377.47 | atmosphere | 1015 | 4320 | > th | dose independent | sin | 15 | NA |
| 629 | 377.49 | wind | 7 | 10 | > th | dose dependent | rect. | 14 | 5 |
| 641 | 377.53 | atmosphere | 1015 | 4320 | < th | dose independent | sin | 14 | NA |
| 742 | 377.65 | atmosphere | 1015 | 4320 | > th | dose dependent | sin | 15 | NA |
| 744 | 377.66 | humidity | 60 | 90 | < th | dose independent | rect. | 9 | 1 |
| 807 | 377.76 | wind | 9 | 30 | > th | dose dependent | no | NA | NA |
| 918 | 377.89 | humidity | 60 | 10 | > th | dose independent | rect. | 12 | 1 |
| 936 | 377.92 | atmosphere | 1005 | 30 | > th | dose independent | rect. | 12 | 1 |