Os02g0493300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tetratricopeptide-like helical domain containing protein.
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Os02g0493300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Tetratricopeptide-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 182.97 | 0.636 | 3.41 | 2.09 | 0.427 | -1.42 | -0.445 | 3.35 | 1.69 | 16.7 | 24 | 4366 | -- | -- |
| 187.63 | 0.638 | 3.5 | 1.34 | 0.437 | -1.14 | -0.565 | -- | 1.62 | 16.5 | 20.82 | 5351 | -- | -- |
| 183.47 | 0.631 | 3.41 | 2.1 | 0.424 | -1.42 | -- | 3.38 | 1.69 | 16.5 | 23.97 | 4369 | -- | -- |
| 187.38 | 0.638 | 3.5 | 1.32 | 0.421 | -1.17 | -- | -- | 1.6 | 16.4 | 21.21 | 4347 | -- | -- |
| 192.29 | 0.646 | 3.41 | 2.1 | -- | -1.48 | -- | 3.28 | 1.7 | -- | 23.64 | 4203 | -- | -- |
| 225.77 | 0.704 | 3.55 | 0.819 | 0.483 | -- | -0.36 | -- | 1.37 | 16.2 | -- | -- | -- | -- |
| 226.11 | 0.704 | 3.55 | 0.816 | 0.479 | -- | -- | -- | 1.37 | 16.1 | -- | -- | -- | -- |
| 195.87 | 0.652 | 3.49 | 1.29 | -- | -1.2 | -- | -- | 1.58 | -- | 21.57 | 4150 | -- | -- |
| 222.17 | 0.694 | 3.6 | -- | 0.44 | -0.771 | -- | -- | 1.18 | 16.6 | 27.83 | 4713 | -- | -- |
| 238.6 | 0.722 | 3.55 | 0.796 | -- | -- | -- | -- | 1.36 | -- | -- | -- | -- | -- |
| 243.66 | 0.73 | 3.57 | -- | 0.464 | -- | -- | -- | 1.28 | 16.1 | -- | -- | -- | -- |
| 232.13 | 0.71 | 3.58 | -- | -- | -0.804 | -- | -- | 1.22 | -- | 27.07 | 4295 | -- | -- |
| 255.33 | 0.746 | 3.57 | -- | -- | -- | -- | -- | 1.27 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 180.91 | temperature | 25 | 4320 | < th | dose independent | rect. | 21 | 14 |
| 2 | 181.02 | temperature | 25 | 4320 | > th | dose independent | rect. | 21 | 14 |
| 8 | 181.55 | temperature | 25 | 4320 | < th | dose independent | sin | 8 | NA |
| 9 | 181.60 | temperature | 25 | 4320 | > th | dose independent | rect. | 18 | 17 |
| 15 | 181.66 | temperature | 25 | 4320 | > th | dose independent | sin | 8 | NA |
| 37 | 182.13 | temperature | 25 | 4320 | < th | dose independent | rect. | 1 | 10 |
| 69 | 182.56 | temperature | 25 | 4320 | < th | dose independent | rect. | 15 | 19 |
| 73 | 182.61 | temperature | 25 | 4320 | > th | dose independent | rect. | 15 | 19 |
| 108 | 182.99 | temperature | 25 | 4320 | > th | dose dependent | sin | 8 | NA |
| 113 | 183.02 | temperature | 25 | 4320 | > th | dose dependent | rect. | 18 | 21 |
| 116 | 183.04 | temperature | 25 | 4320 | > th | dose dependent | rect. | 20 | 19 |
| 141 | 183.18 | temperature | 20 | 4320 | > th | dose dependent | rect. | 1 | 4 |
| 149 | 183.21 | temperature | 20 | 4320 | > th | dose dependent | rect. | 1 | 7 |
| 156 | 183.23 | temperature | 20 | 4320 | > th | dose dependent | rect. | 24 | 9 |
| 182 | 183.33 | temperature | 25 | 4320 | > th | dose dependent | rect. | 14 | 22 |
| 241 | 183.50 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 23 |
| 246 | 183.51 | temperature | 25 | 4320 | > th | dose dependent | no | NA | NA |
| 249 | 183.51 | temperature | 25 | 4320 | > th | dose dependent | rect. | 4 | 23 |
| 253 | 183.52 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 21 |
| 275 | 183.55 | temperature | 25 | 4320 | > th | dose dependent | rect. | 23 | 23 |
| 305 | 183.61 | temperature | 25 | 4320 | > th | dose dependent | rect. | 10 | 23 |
| 411 | 183.86 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 9 |
| 444 | 183.92 | temperature | 20 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 541 | 184.15 | radiation | 1 | 43200 | < th | dose independent | rect. | 10 | 2 |
| 544 | 184.15 | radiation | 1 | 43200 | < th | dose dependent | rect. | 10 | 2 |
| 554 | 184.18 | temperature | 25 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 582 | 184.27 | temperature | 25 | 43200 | < th | dose independent | sin | 13 | NA |
| 597 | 184.30 | temperature | 25 | 43200 | < th | dose independent | rect. | 16 | 13 |
| 607 | 184.32 | temperature | 25 | 43200 | > th | dose independent | sin | 13 | NA |
| 620 | 184.35 | radiation | 1 | 43200 | > th | dose independent | rect. | 10 | 2 |
| 621 | 184.35 | temperature | 25 | 43200 | > th | dose independent | rect. | 17 | 9 |
| 622 | 184.35 | temperature | 25 | 43200 | < th | dose independent | rect. | 17 | 9 |
| 649 | 184.40 | temperature | 25 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 671 | 184.45 | temperature | 25 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 682 | 184.47 | temperature | 25 | 4320 | > th | dose independent | no | NA | NA |
| 705 | 184.50 | temperature | 25 | 4320 | < th | dose independent | no | NA | NA |
| 713 | 184.51 | temperature | 25 | 4320 | < th | dose independent | rect. | 21 | 23 |
| 744 | 184.56 | temperature | 25 | 4320 | > th | dose independent | rect. | 21 | 23 |
| 753 | 184.58 | temperature | 30 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 754 | 184.58 | temperature | 30 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 803 | 184.64 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 23 |
| 813 | 184.65 | temperature | 25 | 4320 | > th | dose independent | rect. | 4 | 23 |
| 826 | 184.67 | humidity | 80 | 43200 | > th | dose independent | rect. | 8 | 5 |
| 830 | 184.67 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 23 |
| 837 | 184.68 | temperature | 25 | 4320 | < th | dose independent | rect. | 3 | 23 |
| 853 | 184.70 | temperature | 25 | 4320 | > th | dose independent | rect. | 1 | 23 |
| 859 | 184.72 | temperature | 25 | 4320 | < th | dose independent | rect. | 1 | 23 |
| 924 | 184.80 | humidity | 80 | 43200 | < th | dose independent | rect. | 8 | 6 |
| 925 | 184.80 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 12 |
| 948 | 184.82 | temperature | 25 | 43200 | > th | dose independent | rect. | 19 | 19 |
| 949 | 184.82 | temperature | 25 | 43200 | < th | dose independent | rect. | 19 | 19 |
| 971 | 184.84 | temperature | 25 | 43200 | < th | dose independent | sin | 7 | NA |
| 983 | 184.85 | temperature | 25 | 43200 | < th | dose independent | rect. | 21 | 16 |