Os12g0600100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tetratricopeptide-like helical domain containing protein.
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Os12g0600100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Tetratricopeptide-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 154.72 | 0.584 | 6.82 | -0.784 | 0.402 | 2.47 | 0.861 | -1.26 | 0.0882 | 9.89 | 21.1 | 10 | -- | -- |
| 155.93 | 0.582 | 6.8 | -0.572 | 0.402 | 2.44 | 0.664 | -- | 0.147 | 9.62 | 21 | 10 | -- | -- |
| 157.11 | 0.584 | 6.81 | -0.625 | 0.397 | 2.42 | -- | -0.525 | 0.13 | 10.2 | 21 | 8 | -- | -- |
| 157.35 | 0.584 | 6.79 | -0.537 | 0.404 | 2.39 | -- | -- | 0.156 | 10.2 | 21 | 8 | -- | -- |
| 165.73 | 0.6 | 6.83 | -0.686 | -- | 2.63 | -- | -0.651 | 0.0921 | -- | 20.91 | 7 | -- | -- |
| 241.93 | 0.729 | 6.7 | -0.0656 | 1.14 | -- | 0.717 | -- | 0.555 | 13.2 | -- | -- | -- | -- |
| 244.04 | 0.732 | 6.7 | -0.04 | 1.14 | -- | -- | -- | 0.559 | 13.2 | -- | -- | -- | -- |
| 166.12 | 0.6 | 6.81 | -0.578 | -- | 2.59 | -- | -- | 0.124 | -- | 20.9 | 7 | -- | -- |
| 164.35 | 0.597 | 6.77 | -- | 0.438 | 2.21 | -- | -- | 0.244 | 10.8 | 21.04 | 7 | -- | -- |
| 323.84 | 0.841 | 6.72 | -0.084 | -- | -- | -- | -- | 0.536 | -- | -- | -- | -- | -- |
| 244.09 | 0.731 | 6.7 | -- | 1.14 | -- | -- | -- | 0.564 | 13.2 | -- | -- | -- | -- |
| 174.57 | 0.615 | 6.79 | -- | -- | 2.46 | -- | -- | 0.207 | -- | 20.97 | 6 | -- | -- |
| 324.02 | 0.84 | 6.72 | -- | -- | -- | -- | -- | 0.546 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 153.88 | temperature | 30 | 30 | < th | dose dependent | sin | 1 | NA |
| 3 | 154.21 | temperature | 10 | 30 | > th | dose dependent | sin | 2 | NA |
| 24 | 155.54 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 35 | 156.10 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 38 | 156.44 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 39 | 156.47 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 40 | 156.50 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 51 | 157.96 | temperature | 20 | 30 | > th | dose dependent | rect. | 6 | 23 |
| 55 | 158.11 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 69 | 159.53 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 21 |
| 71 | 159.72 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 16 |
| 85 | 160.62 | temperature | 20 | 10 | > th | dose dependent | rect. | 2 | 23 |
| 93 | 161.12 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 95 | 161.33 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 17 |
| 108 | 162.39 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 112 | 162.51 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 129 | 163.17 | temperature | 20 | 90 | > th | dose dependent | rect. | 20 | 23 |
| 153 | 164.42 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 155 | 164.52 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 171 | 165.31 | temperature | 20 | 90 | > th | dose dependent | rect. | 17 | 23 |
| 179 | 165.56 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 186 | 165.85 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 187 | 165.88 | temperature | 30 | 30 | < th | dose dependent | no | NA | NA |
| 190 | 166.10 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 194 | 166.27 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 217 | 166.89 | temperature | 20 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 221 | 167.05 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 227 | 167.36 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 17 |
| 229 | 167.49 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 234 | 167.59 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 247 | 167.95 | temperature | 25 | 10 | < th | dose independent | rect. | 5 | 15 |
| 256 | 168.10 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 290 | 168.87 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 294 | 169.11 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 353 | 170.78 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 14 |
| 385 | 171.57 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 417 | 172.16 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 12 |
| 444 | 172.65 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 452 | 172.85 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 16 |
| 454 | 172.87 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 14 |
| 460 | 172.97 | wind | 7 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 475 | 173.13 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 21 |
| 520 | 173.58 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 545 | 173.87 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 565 | 174.17 | radiation | 1 | 1440 | < th | dose dependent | sin | 20 | NA |
| 607 | 174.52 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 11 |
| 612 | 174.54 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 9 |
| 701 | 175.35 | temperature | 25 | 10 | < th | dose independent | sin | 0 | NA |
| 761 | 176.09 | wind | 5 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 762 | 176.10 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 22 |
| 781 | 176.35 | wind | 7 | 43200 | > th | dose dependent | rect. | 14 | 7 |
| 826 | 176.85 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 22 |
| 843 | 176.96 | temperature | 20 | 270 | > th | dose dependent | rect. | 22 | 13 |
| 848 | 176.99 | wind | 7 | 43200 | > th | dose independent | rect. | 13 | 9 |
| 861 | 177.10 | temperature | 25 | 10 | > th | dose independent | sin | 23 | NA |
| 903 | 177.55 | wind | 7 | 43200 | < th | dose independent | rect. | 13 | 9 |
| 940 | 177.88 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 19 |
| 943 | 177.90 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 13 |
| 944 | 177.90 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 17 |
| 989 | 178.18 | radiation | 1 | 1440 | < th | dose dependent | rect. | 19 | 23 |