Os12g0636100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tetratricopeptide-like helical domain containing protein.
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Os12g0636100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Tetratricopeptide-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 76.57 | 0.411 | 7.41 | -0.115 | 0.809 | -0.68 | -0.121 | -2.06 | -0.15 | 11.9 | 1.079 | 4288 | -- | -- |
| 79.78 | 0.416 | 7.37 | 0.206 | 0.8 | -0.452 | 0.0675 | -- | -0.0232 | 12 | 20 | 10612 | -- | -- |
| 76.63 | 0.408 | 7.41 | -0.119 | 0.805 | -0.685 | -- | -2.06 | -0.152 | 11.9 | 1.074 | 4281 | -- | -- |
| 79.59 | 0.415 | 7.36 | 0.244 | 0.832 | -0.439 | -- | -- | -0.0274 | 12.1 | 20.01 | 10684 | -- | -- |
| 93 | 0.452 | 7.42 | 0.176 | -- | 0.601 | -- | -0.0912 | -0.201 | -- | 1.074 | 4281 | -- | -- |
| 86.69 | 0.436 | 7.39 | 0.211 | 0.862 | -- | -0.000318 | -- | -0.176 | 11.9 | -- | -- | -- | -- |
| 86.69 | 0.436 | 7.39 | 0.211 | 0.862 | -- | -- | -- | -0.176 | 11.9 | -- | -- | -- | -- |
| 93.05 | 0.451 | 7.42 | 0.177 | -- | 0.6 | -- | -- | -0.2 | -- | 1.074 | 4281 | -- | -- |
| 80.95 | 0.419 | 7.36 | -- | 0.842 | -0.449 | -- | -- | -0.0354 | 12.2 | 21.88 | 10601 | -- | -- |
| 133.43 | 0.54 | 7.41 | 0.185 | -- | -- | -- | -- | -0.188 | -- | -- | -- | -- | -- |
| 87.86 | 0.438 | 7.4 | -- | 0.859 | -- | -- | -- | -0.2 | 11.9 | -- | -- | -- | -- |
| 93.88 | 0.453 | 7.42 | -- | -- | 0.601 | -- | -- | -0.22 | -- | 1.074 | 4281 | -- | -- |
| 134.33 | 0.541 | 7.42 | -- | -- | -- | -- | -- | -0.208 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 74.07 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 15 | 7 |
| 6 | 74.39 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 14 | 9 |
| 8 | 74.43 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 4 | 18 |
| 12 | 74.48 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 13 | 10 |
| 15 | 74.53 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 11 | 13 |
| 21 | 74.60 | humidity | 80.0 | 43200 | > th | dose independent | sin | 18 | NA |
| 28 | 74.67 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 1 | 14 |
| 29 | 74.68 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 11 | 13 |
| 30 | 74.68 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 5 | 18 |
| 41 | 74.75 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 4 | 18 |
| 44 | 74.77 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 8 | 16 |
| 52 | 74.81 | humidity | 70.0 | 43200 | > th | dose dependent | sin | 19 | NA |
| 54 | 74.81 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 1 | 15 |
| 61 | 74.83 | humidity | 80.0 | 43200 | < th | dose independent | sin | 18 | NA |
| 68 | 74.85 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 73 | 74.87 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 78 | 74.88 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 102 | 74.96 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 111 | 74.99 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 113 | 74.99 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 115 | 75.00 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 1 | 12 |
| 133 | 75.10 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 7 | 10 |
| 144 | 75.17 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 7 | 10 |
| 162 | 75.24 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 1 | 3 |
| 165 | 75.25 | humidity | 60.0 | 43200 | > th | dose dependent | rect. | 14 | 4 |
| 182 | 75.30 | humidity | 70.0 | 43200 | > th | dose dependent | sin | 1 | NA |
| 183 | 75.30 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 3 |
| 193 | 75.33 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 229 | 75.44 | humidity | 60.0 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 265 | 75.52 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 18 | 22 |
| 270 | 75.54 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 3 | 6 |
| 272 | 75.54 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 4 | 10 |
| 295 | 75.59 | temperature | 15.0 | 270 | > th | dose independent | rect. | 3 | 21 |
| 305 | 75.61 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 1 | 19 |
| 310 | 75.63 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 3 | 6 |
| 312 | 75.63 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 315 | 75.63 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 3 | 6 |
| 343 | 75.68 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 13 | 2 |
| 346 | 75.68 | radiation | 30.0 | 1440 | < th | dose independent | rect. | 15 | 17 |
| 350 | 75.69 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 351 | 75.69 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 354 | 75.69 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 360 | 75.70 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 3 | 6 |
| 362 | 75.70 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 364 | 75.70 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 13 | 3 |
| 374 | 75.73 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 1 | 3 |
| 376 | 75.73 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 1 | 3 |
| 381 | 75.73 | wind | 9.0 | 270 | < th | dose dependent | rect. | 5 | 18 |
| 387 | 75.75 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 401 | 75.77 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 403 | 75.77 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 413 | 75.78 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 7 | 7 |
| 422 | 75.79 | humidity | 90.0 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 432 | 75.80 | radiation | 40.0 | 1440 | > th | dose independent | rect. | 14 | 19 |
| 436 | 75.81 | wind | 1.0 | 14400 | < th | dose independent | rect. | 12 | 2 |
| 442 | 75.82 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 1 | 3 |
| 444 | 75.82 | temperature | 15.0 | 270 | > th | dose independent | rect. | 5 | 18 |
| 468 | 75.85 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 4 | 13 |
| 469 | 75.85 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 24 | 17 |
| 479 | 75.86 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 4 | 13 |
| 535 | 75.89 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 548 | 75.91 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 551 | 75.91 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 1 | 8 |
| 567 | 75.93 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 7 | 7 |
| 568 | 75.93 | wind | 5.0 | 270 | < th | dose independent | rect. | 3 | 21 |
| 573 | 75.94 | radiation | 1.0 | 14400 | < th | dose independent | sin | 2 | NA |
| 600 | 75.95 | radiation | 10.0 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 601 | 75.95 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 606 | 75.95 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 15 |
| 607 | 75.96 | humidity | 80.0 | 43200 | < th | dose independent | sin | 1 | NA |
| 608 | 75.96 | radiation | 1.0 | 14400 | > th | dose independent | sin | 2 | NA |
| 629 | 75.98 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 7 | 2 |
| 685 | 76.02 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 9 |
| 687 | 76.02 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 5 | 12 |
| 717 | 76.05 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 1 | 8 |
| 718 | 76.05 | radiation | 30.0 | 1440 | > th | dose independent | rect. | 15 | 17 |
| 720 | 76.05 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 1 | 8 |
| 729 | 76.06 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 13 | 5 |
| 738 | 76.06 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 21 | 20 |
| 758 | 76.08 | radiation | 40.0 | 4320 | > th | dose independent | rect. | 14 | 1 |
| 763 | 76.08 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 6 | 23 |
| 764 | 76.08 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 6 | 23 |
| 771 | 76.08 | wind | 9.0 | 270 | < th | dose dependent | rect. | 4 | 20 |
| 772 | 76.08 | radiation | 40.0 | 1440 | > th | dose dependent | rect. | 14 | 20 |
| 776 | 76.09 | humidity | 80.0 | 43200 | > th | dose independent | sin | 1 | NA |
| 777 | 76.09 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 6 | 19 |
| 780 | 76.09 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 782 | 76.09 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 15 | 2 |
| 784 | 76.09 | radiation | 40.0 | 4320 | < th | dose dependent | rect. | 17 | 8 |
| 795 | 76.10 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 1 | 8 |
| 803 | 76.10 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 6 | 16 |
| 879 | 76.14 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 889 | 76.14 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 13 |
| 892 | 76.14 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 1 | 19 |
| 934 | 76.16 | radiation | 1.0 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 937 | 76.16 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 5 | 7 |
| 947 | 76.17 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 968 | 76.18 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 14 | 1 |
| 975 | 76.18 | precipitation | 0.1 | 43200 | > th | dose dependent | sin | 11 | NA |
| 986 | 76.18 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 21 | 15 |
| 996 | 76.19 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 7 | 10 |